View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_17 (Length: 462)
Name: NF18926_high_17
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 41247527 - 41247095
Alignment:
| Q |
1 |
tattcggtcaaaaactttaatgaaacttacaatgtaagattcgacatgttnnnnnnntcatctataaatttgtgaatgacttcgacccatccctcacaaa |
100 |
Q |
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| T |
41247527 |
tattcggtcaaaaactttaatgaaacttacaatgtaagattcaatatgttacaaaaatcatctataaatttgtgaatgacttcgacccatccctcacaaa |
41247428 |
T |
|
| Q |
101 |
tcaaaagtaaactcgttcttcaatatatcactcacaagattgcaaatttcgattgagcatagttgattgcactgcaaccaatacatctgaacaattcgat |
200 |
Q |
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| T |
41247427 |
tcaaaagcaaactcgttcttcaatatatcactcacaagattgcaaatttggattgagcatagttgattgcactgcaaccaatacatctgaacaattcgat |
41247328 |
T |
|
| Q |
201 |
taagatcagatggtttggattttaagttcaatttcgaacttaaaatctgaattgtccgatcttaattagatgattcagatgtgactgattgtagtgcggc |
300 |
Q |
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| T |
41247327 |
taagatcagatggtttggattttaagttcaatttcgaacttaaaatctgaattctccgatcttaattagatggttcagatgtgactgattgtagtgcggc |
41247228 |
T |
|
| Q |
301 |
cacgacatccagagtgcacacaaacctcgtcccatgaacacttcataaaattcaatgcagttctataaaaaagatatcattttgacaaaaatccatgttt |
400 |
Q |
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| T |
41247227 |
cacgacatccagagtgcacacaaacctcgtcccatgaacacttcataaaattcaatgcagttctataaaaaagatataattttgacaaaaatccatgttt |
41247128 |
T |
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| Q |
401 |
actttttagataacatgtatcattcaattttct |
433 |
Q |
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| T |
41247127 |
actttttagataacatgtatcattcaattttct |
41247095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 6 - 444
Target Start/End: Original strand, 41240277 - 41240719
Alignment:
| Q |
6 |
ggtcaaaaactttaatgaaacttacaatgtaagattcgacatgttnnnnnnn-tcatctataaatttgtgaatgacttcgacccatccctcacaaatcaa |
104 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||||| | |||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
41240277 |
ggtcaaaaaaattaatgaaacttacaatgtaagattcaacatgttacaaaaaataatctataaatgtgtgaacgacttcgactcatccctcacaaatcaa |
41240376 |
T |
|
| Q |
105 |
aagtaaactcgttcttcaatatatcactcacaagattgcaaatttcgattgagcatagttgattgcactgcaaccaatacatctgaacaattcg----at |
200 |
Q |
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|||||||||| || ||| ||||| |||||| ||||| | |||| |||||| ||||||||||||||| ||||||| |||||| |||| | || |
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| T |
41240377 |
aagtaaactcatttttccatataccactcagaagatcatagatttggattgaatatagttgattgcactacaaccaacacatctaggcaatccagttaat |
41240476 |
T |
|
| Q |
201 |
taagatcagatggtttggattttaagttcaatttcgaacttaaaatctgaattgtccgatcttaattagatgattcagatgtgactgattgtagtgcggc |
300 |
Q |
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||| ||||| |||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||| |||| | |||||||| |||| || ||||||| |
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| T |
41240477 |
taatatcaggtggtccagattttaagttcaaattcgagcttaaaatctggtttgtccaatcttaattggatggtccagatgtgtctgactgcagtgcggt |
41240576 |
T |
|
| Q |
301 |
cacgacatccagagtgcacacaaacctcgtcccatgaacacttcataaaattcaatgcagttctataaaaaagatatcattttgacaaaaatccatgttt |
400 |
Q |
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|| || |||| || ||||||||| || | | |||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||| |||||||| |
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| T |
41240577 |
catgaaatcctgacggcacacaaatcttg-ctcatgaacactccataaaattcaatgcaattttatcaaaaagatatcattttgacaaaaacccatgttt |
41240675 |
T |
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| Q |
401 |
actttttagataacatgtatcattcaattttctatgtttagaat |
444 |
Q |
| |
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||||||| ||||||||| |||||||||||||| ||| ||||||| |
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|
| T |
41240676 |
actttttggataacatgcatcattcaattttcaatgcttagaat |
41240719 |
T |
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