View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18926_high_18 (Length: 449)
Name: NF18926_high_18
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_18 |
 | |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 45075048 - 45074608
Alignment:
| Q |
12 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45075048 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
45074949 |
T |
|
| Q |
112 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45074948 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaa |
45074849 |
T |
|
| Q |
212 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtctctaatgcgactattgaaatgagtgcacataagaag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45074848 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtttctaatgcgactattgaaatgagtgcacataagaag |
45074749 |
T |
|
| Q |
312 |
aaacttccatggaattgcactgatgtttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaa---ttgaatgtcctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||| |||||| |||| |||||||||||| |
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|
| T |
45074748 |
aaacttccatggaattgcactgatgtttctggagttacaagtaatgtgagtcctacaccctgtgaattgctggcagagaaagaaaaatttgaatgtcctt |
45074649 |
T |
|
| Q |
409 |
ttccaacagataaactacccattgaaaatgttcagttcaag |
449 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
45074648 |
ttccaactgataaacttaccattgaaaatgttcagttcaag |
45074608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 45082574 - 45082137
Alignment:
| Q |
12 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
111 |
Q |
| |
|
|||||||| |||||||| |||||| | ||| |||||||||| || | |||||||||||||||||||||||||||| ||||| | ||| |||||||||| | |
|
|
| T |
45082574 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
45082475 |
T |
|
| Q |
112 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaa |
211 |
Q |
| |
|
||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
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|
| T |
45082474 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
45082375 |
T |
|
| Q |
212 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtctctaatgcgactattgaaatgagtgcacataagaag |
311 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45082374 |
gaatgtgactattgcgggcaaagttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
45082275 |
T |
|
| Q |
312 |
aaacttccatggaattgcactgatgtttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttc |
411 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45082274 |
aaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttc |
45082175 |
T |
|
| Q |
412 |
caacagataaactacccattgaaaatgttcagttcaag |
449 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
45082174 |
caagagataaactacccattgaaaatgttcaattcaag |
45082137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 449
Target Start/End: Complemental strand, 45067489 - 45067051
Alignment:
| Q |
11 |
cacagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgtt |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45067489 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
45067390 |
T |
|
| Q |
111 |
ttttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgcca |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| | |
|
|
| T |
45067389 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgcta |
45067290 |
T |
|
| Q |
211 |
agaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtctctaatgcgactattgaaatgagtgcacataagaa |
310 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||||||||||||||||| || || || || | ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
45067289 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaa |
45067190 |
T |
|
| Q |
311 |
gaaacttccatggaattgcactgatgtttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtcctttt |
410 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||| |||| |||||||||||| |
|
|
| T |
45067189 |
taatcttccatggaattgcactgatgtttctggagttgcaagtaatgcggttcctaaaccatgtgatatgctgccagagaagaaaatcgaatgtcctttt |
45067090 |
T |
|
| Q |
411 |
ccaacagataaactacccattgaaaatgttcagttcaag |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45067089 |
ccaacagataaactacccattgaaaatgttcagttcaag |
45067051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 449
Target Start/End: Complemental strand, 45078279 - 45077841
Alignment:
| Q |
11 |
cacagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgtt |
110 |
Q |
| |
|
||||||||| ||| ||||||| ||| | || |||||||||| || | ||||||||||||||| |||||||||||| ||||| | |||||||||||||| |
|
|
| T |
45078279 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtg |
45078180 |
T |
|
| Q |
111 |
ttttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgcca |
210 |
Q |
| |
|
|||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
45078179 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
45078080 |
T |
|
| Q |
211 |
agaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtctctaatgcgactattgaaatgagtgcacataagaa |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45078079 |
agaatgtgactattgcgggcaaacttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
45077980 |
T |
|
| Q |
311 |
gaaacttccatggaattgcactgatgtttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtcctttt |
410 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45077979 |
gaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaattgctgcaagagaaggaaattgaatgtcctttt |
45077880 |
T |
|
| Q |
411 |
ccaacagataaactacccattgaaaatgttcagttcaag |
449 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
45077879 |
ccaacagataaactagccatcgaaaatgttcaattcaag |
45077841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 34504823 - 34504377
Alignment:
| Q |
12 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaat---gaaatatg |
108 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||| || ||||| |
|
|
| T |
34504823 |
acagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatg |
34504724 |
T |
|
| Q |
109 |
ttttttggatgacagggtcttata-agtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactg |
207 |
Q |
| |
|
| |||||| |||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| |||||| | || ||||||||||| || |
|
|
| T |
34504723 |
tgttttggttgacagggtcttatggagac-caccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattg |
34504625 |
T |
|
| Q |
208 |
ccaagaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtctctaatgcgactattgaaatgagtgcacataa |
307 |
Q |
| |
|
| ||||||||||| |||| || ||||||| |||||||||||||| |||||||| || || ||| | ||||||| |||||||||| | || | | ||| |
|
|
| T |
34504624 |
ctaagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatccttttacagggatatgtatttctaatgtgactattgaattaagcgagcttaa |
34504525 |
T |
|
| Q |
308 |
gaagaa------acttccatggaattgcactgatgtttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaa |
401 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
34504524 |
gaagaagaagaaacttccatggaattgcacagatgtttctggagttacaagtaatgtggttcctaaaccatgtgatctgctgtcagagaagaaaattgaa |
34504425 |
T |
|
| Q |
402 |
tgtccttttccaacagataaactacccattgaaaatgttcagttcaag |
449 |
Q |
| |
|
||||| ||||||||||||||| | | |||||| |||||||||||||| |
|
|
| T |
34504424 |
tgtccctttccaacagataaattggctattgaagatgttcagttcaag |
34504377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 334 - 449
Target Start/End: Complemental strand, 12698128 - 12698013
Alignment:
| Q |
334 |
atgtttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttccaacagataaactacccattga |
433 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12698128 |
atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattga |
12698029 |
T |
|
| Q |
434 |
aaatgttcagttcaag |
449 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
12698028 |
aaatgttctgttcaag |
12698013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 17584522 - 17584414
Alignment:
| Q |
16 |
aatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttg |
115 |
Q |
| |
|
|||| ||| ||||||||||||| || | |||||||| ||||||||||| | || ||||| | ||||||||| ||| | |||||||||||||| ||||| |
|
|
| T |
17584522 |
aatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttg |
17584423 |
T |
|
| Q |
116 |
gatgacagg |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
17584422 |
gatgacagg |
17584414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 11061616 - 11061585
Alignment:
| Q |
240 |
ggaatttctaatgacccttttactggaatttg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11061616 |
ggaatttctaatgacccttttactggaatttg |
11061585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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