View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_22 (Length: 434)
Name: NF18926_high_22
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 35045589 - 35045872
Alignment:
| Q |
17 |
tagtgttgaatagtacaagacgaaagccaacccccgtatatatataaccgtacaatgtgtagtggatttatttttgaagggtgcaatgtatagtggattg |
116 |
Q |
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| T |
35045589 |
tagtgctgaatagtatgagacgaaagccaacccccgtatatatataaccgtacaatgtgtagtggatttatttttgaagggtgcaatgtatagtggattg |
35045688 |
T |
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| Q |
117 |
tctgctaagaaag-nnnnnnnntatgcatgcatattgtcgtgaaaaaccaataagctttgtcgccatcaagggtacgataatatttgctatttcaaatgc |
215 |
Q |
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| T |
35045689 |
tctactaagaaagaaaaaaaaatatgcatgcatattgtcatgaaaaaccaataagctttgtcgccatcaagggtacgataatatt------------tgc |
35045776 |
T |
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| Q |
216 |
tatttcttcaaacttggaaaacaaaataaaaagagcatgtagcggttaaggaccacaagaagcttacacaatacatgatg-tttattgagtaattt |
310 |
Q |
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| T |
35045777 |
tatttcttcaaactcggaaaacaaaataaaaagagcatgtagcggttaaggaccacaagaagcttacacaatacatgatgttttattgagtaattt |
35045872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 35045894 - 35046014
Alignment:
| Q |
296 |
tttattgagtaatttaatttactaacaaattgagaactagttttatttaagtaaaaaattatattatggtgctcccttaaataagtgggtttaattaagt |
395 |
Q |
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| T |
35045894 |
tttattgagtaatttaatttactaacaaattgagaactagttttatttaagtaacaaattatattatggtgctccctgaaataagtgggtttaattaagt |
35045993 |
T |
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| Q |
396 |
ataatatttacatcggtagtg |
416 |
Q |
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| T |
35045994 |
ataatatttacatcggtagtg |
35046014 |
T |
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