View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_23 (Length: 428)
Name: NF18926_high_23
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_23 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 34465320 - 34465721
Alignment:
| Q |
11 |
ataatactactatgtttggnnnnnnnnaccacaagcttaaaataaagtgattttactatacaggcatcagccatagtgatgaagtcgatacaagtgttat |
110 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34465320 |
ataatactactatgtttggttttttttaccacaagcttaaaataaagtgattttgctatacaggcatcagccatagtgatgaagttgatacaagtgttat |
34465419 |
T |
|
| Q |
111 |
ctcaccttttgtgaaagtatattttcctactcttgattgtttcacattccatgctttctattctttcttttatttatttttnnnnnnnn---tggtatat |
207 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
34465420 |
ctcaccttttgtgaaagtatattttcctactcttgtttgtttcacattccatgctttctattctttcttttatttattttttaaaataaaaatggtacat |
34465519 |
T |
|
| Q |
208 |
tcaatttttgcatacctgaatttttaggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34465520 |
tcaatttttgcatacctgaatttttaggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgg |
34465619 |
T |
|
| Q |
308 |
gacacccaaaaccttttaacctaaaatatgttgctattggtaacgaagattgttacaagaaaaattactatggtattctttctcttttcatcatacctac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
34465620 |
gacacccaaaaccttttaacctaaaatatgttgctattggtaacgaagattgttacaagaaaaattactatggtattctttctcttttcctcatatctac |
34465719 |
T |
|
| Q |
408 |
ac |
409 |
Q |
| |
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|| |
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|
| T |
34465720 |
ac |
34465721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 200 - 360
Target Start/End: Original strand, 34449258 - 34449418
Alignment:
| Q |
200 |
tggtatattcaatttttgcatacctgaatttttaggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagc |
299 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||||||| |
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| T |
34449258 |
tggtatattcaattttggcatacctgaatttgtaggaagcacttgatggtattgagtttgctagaggtccatcctcttcaaaatggggatcccttagagc |
34449357 |
T |
|
| Q |
300 |
atctatgggacacccaaaaccttttaacctaaaatatgttgctattggtaacgaagattgt |
360 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
34449358 |
atctatgggacacccagaaccttttgtcctaaaatatgttgctattggtaatgaagattgt |
34449418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 213 - 402
Target Start/End: Original strand, 34438384 - 34438573
Alignment:
| Q |
213 |
ttttgcatacctgaatttttaggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggacac |
312 |
Q |
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||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |
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| T |
34438384 |
ttttgcataactgaatttgtaggaagcacttgatagtattgagtttgctagaggtccatccacttcaaaatggggagccattagagcatctatgggacac |
34438483 |
T |
|
| Q |
313 |
ccaaaaccttttaacctaaaatatgttgctattggtaacgaagattgttacaagaaaaattactatggtattctttctcttttcatcata |
402 |
Q |
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||| | |||||| |||||||||| ||||| |||||| | | ||||| | |||||||||| ||||||||||||||||||| ||||| |
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| T |
34438484 |
ccagagccttttgtcctaaaatatattgctcttggtagcaataattgtgggatgaaaaattaccttggtattctttctcttttcctcata |
34438573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 34449142 - 34449236
Alignment:
| Q |
58 |
tgattttactatacaggcatcagccatagtgatgaagtcgatacaagtgttatctcaccttttgtgaaagtatattttcctactcttgattgttt |
152 |
Q |
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|||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||| ||||||||||||||||||| | |||||| |
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| T |
34449142 |
tgattttactatacaggcatcagccataccgatgaaattgatacaaaagacatccaaccttttgtgcaagtatattttcctactctagtttgttt |
34449236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 34164036 - 34164115
Alignment:
| Q |
232 |
taggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggaca |
311 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||| ||| ||||||| ||| ||||||| || |||||||| |
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| T |
34164036 |
taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggaca |
34164115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 34170533 - 34170612
Alignment:
| Q |
232 |
taggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggaca |
311 |
Q |
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|||||||| || || ||||||||||||||||||||||| ||||| ||| ||||||| ||| ||||||| || |||||||| |
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| T |
34170533 |
taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggaca |
34170612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 34214132 - 34214211
Alignment:
| Q |
232 |
taggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggaca |
311 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||| ||| ||||||| ||| ||||||| || |||||||| |
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| T |
34214132 |
taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggaca |
34214211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 34438231 - 34438333
Alignment:
| Q |
60 |
attttactatacaggcatcagccatagtgatgaagtcgatacaagtgttatctcaccttttgtgaaagtatattttcctactcttgattgtttcacattc |
159 |
Q |
| |
|
|||||||||||||||| |||| | | |||| || |||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||| ||| | |
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| T |
34438231 |
attttactatacaggcctcagtgagactgatagtgttgatacaagtgccatctcaccttttgtgcaagtatattttcttactcttatttgtttcccatcc |
34438330 |
T |
|
| Q |
160 |
cat |
162 |
Q |
| |
|
||| |
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|
| T |
34438331 |
cat |
34438333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 30857 - 30936
Alignment:
| Q |
232 |
taggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggaca |
311 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||| ||| ||||||| ||| ||||||| || |||||||| |
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| T |
30857 |
taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggaca |
30936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 8947417 - 8947308
Alignment:
| Q |
227 |
atttttaggaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggacacccaaaaccttttaa |
326 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| ||| ||||||||| ||||| || ||||||| |||||||||||||| ||||||| || |
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| T |
8947417 |
atttttaggatgcccttgatggtattgagtttgctataggaagtcccacttcaaggtggggttccattagagcttctatgggacaccctcaacctttcaa |
8947318 |
T |
|
| Q |
327 |
cctaaaatat |
336 |
Q |
| |
|
|||||||||| |
|
|
| T |
8947317 |
cctaaaatat |
8947308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 38725832 - 38725719
Alignment:
| Q |
247 |
ggtattgagtttgctagaggttcat-ccacttcaaaatggggctctgttagagcatctatgggacacccaaaaccttttaacctaaaatatgttgctatt |
345 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| ||||||| |||||||| || || |||||||| || |||| | ||| | |||| |||||||||| |
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| T |
38725832 |
ggtattgagtttgctagagg-tcatgccaattcacaatggggttctgttagggcttccatgggacatcctcaaccatgtaatttgaaatttgttgctatt |
38725734 |
T |
|
| Q |
346 |
ggtaacgaagattgt |
360 |
Q |
| |
|
|| || ||||||||| |
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|
| T |
38725733 |
ggaaatgaagattgt |
38725719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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