View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_24 (Length: 415)
Name: NF18926_high_24
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 15596504 - 15596891
Alignment:
| Q |
13 |
tagaatacacaaagccttatactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaag |
112 |
Q |
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| T |
15596504 |
tagaatacacaaagccttgtactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaag |
15596603 |
T |
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| Q |
113 |
agacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacctga |
212 |
Q |
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| T |
15596604 |
agacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacctga |
15596703 |
T |
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| Q |
213 |
ctaagtcaagagagtttagaatcatctctagtatggtagtccggtagttcatctcagtaagcacaaggaatgtcagtcagctagaaaggagtcgtgtgcg |
312 |
Q |
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| T |
15596704 |
gtaagtcaagagagtttagaatcgtctctagtatggtagtccagtagttcagctcagtaagcacaaggaatgtcagtcagctagaaaggagtcgtgtgcg |
15596803 |
T |
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| Q |
313 |
aggcaaaagaatgaatgtgatatctagaaggtttttctcaaggctcatgataacgtttgaagtagcaagtgtagtaacatgaaattga |
400 |
Q |
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| T |
15596804 |
aggcaaaagaatgaatgtgatatccagaaggcttttctcaaggctcaaggtaacgtttgaagtagcaagtgtagtaacatgaaattga |
15596891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15596276 - 15596509
Alignment:
| Q |
1 |
gcaaggaattaatagaatacacaaagccttatactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtg |
100 |
Q |
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| T |
15596276 |
gcaaggaattaatagaatacacaaagccttgtactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagctggtagccgtttccagtg |
15596375 |
T |
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| Q |
101 |
agaagtgttaagagacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagacgt |
200 |
Q |
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| T |
15596376 |
agaagtgttaagagacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagacgt |
15596475 |
T |
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| Q |
201 |
agttctacctgactaagtcaagagagtttagaat |
234 |
Q |
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| T |
15596476 |
agttctacctgagtaagtcaagagagtttagaat |
15596509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 14735044 - 14735154
Alignment:
| Q |
36 |
ttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaattttttaag |
135 |
Q |
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|||||||| ||||||||||||||| ||||||||| || |||||||||| ||||| |||| |||||||||| || ||||| |||||||||||| || ||| |
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| T |
14735044 |
ttggaataggagtttcatgagataggataagtagccgttagtcaagcggttagccatttctagtgagaagtattgagagatgagtaagaaattcttgaag |
14735143 |
T |
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| Q |
136 |
cgccaagttca |
146 |
Q |
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| T |
14735144 |
caccaggttca |
14735154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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