View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_33 (Length: 389)
Name: NF18926_high_33
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 3810514 - 3810143
Alignment:
| Q |
1 |
acataatgccaagtgagcatatctatcacttaacatataaatatattctgaaatcttctgtctaagaagttatagactattagaccaccttaatatcaac |
100 |
Q |
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| T |
3810514 |
acataatgccaagtgagcatatctatcacttaacatataaatatattctgaaatcttctgtctaagaagttatagactattagaccaccttaatatcaac |
3810415 |
T |
|
| Q |
101 |
aatacgtagattcgagtgaaattggattcagatccttaaacaaggtcttggatttgagcacagtggatggaaaaaacataattgagagaagagactccaa |
200 |
Q |
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| T |
3810414 |
attacgtagattcgagtgaaattggattcagatccttaaacaaggtcttggatttgagcacagtggatggaaaaaacataatcaagagaagagactccaa |
3810315 |
T |
|
| Q |
201 |
taaagggtttaagtaaatatacatatggaccaaaaaagaccaccttaatgattacttgcaccaataacatggttacaaagaaaaaacaaaacacttactg |
300 |
Q |
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| T |
3810314 |
taaagggtttaagtaaatatacatatggaccaaaaaagaccaccttaatgattacttgcaccaataacattgttccaaagaaaaaacaaaacacttactg |
3810215 |
T |
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| Q |
301 |
atttccgttacaataagattagagaaactcaaaaataatgaatacggccctttcaaacttaccctatagttt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810214 |
atttccgttacaataagattagagaaactcaaaaataatgaatacggccctttcaaacttaccctatagttt |
3810143 |
T |
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