View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_34 (Length: 360)
Name: NF18926_high_34
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 1538334 - 1538006
Alignment:
| Q |
16 |
atgcattagaaaaatggaaaattaaaagtcatatattgggaaatcatcaaatttttatttaacacgctgtaaaattaacaagagacctccactttcataa |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538334 |
atgcattagaaaaatggaaaattaaaagtcatacattgggaaatcatcaaatttttatttaacacgctgtaaaattaacaagagacctccactttcataa |
1538235 |
T |
|
| Q |
116 |
aacagaaaaccctcttgcatataggaaaacacgtaaatagactcttgtaaccacttatcaattagaagtaattttgaaaatcattacatttatgatttca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1538234 |
aacagaaaaccctcttgcatataggaaaacacgtaaatagatgcttgtaaccacttatcaattagaagtaattttgaaaaccattacatttatgatttca |
1538135 |
T |
|
| Q |
216 |
aaatacaatctagcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538134 |
aaatacaatctagcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatg |
1538035 |
T |
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| Q |
316 |
ttaactttcttaacgatggccttgaaaat |
344 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
1538034 |
ttaactttcttaacgatggccttgaaaat |
1538006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 344
Target Start/End: Complemental strand, 1513758 - 1513643
Alignment:
| Q |
229 |
cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa |
328 |
Q |
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|||| |||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
1513758 |
cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaa |
1513659 |
T |
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| Q |
329 |
cgatggccttgaaaat |
344 |
Q |
| |
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|||||||||||||||| |
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| T |
1513658 |
cgatggccttgaaaat |
1513643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 229 - 344
Target Start/End: Complemental strand, 1489715 - 1489600
Alignment:
| Q |
229 |
cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa |
328 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||| || |||||||||||| |
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| T |
1489715 |
cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaattgataatcatatggagttgataactttcttaa |
1489616 |
T |
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| Q |
329 |
cgatggccttgaaaat |
344 |
Q |
| |
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|||||||||||||||| |
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| T |
1489615 |
cgatggccttgaaaat |
1489600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 1508359 - 1508242
Alignment:
| Q |
227 |
agcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttctt |
326 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||| ||||| ||||| |
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| T |
1508359 |
agcacttttagaatactagcaaacaatgcatccttgacgtgataagtgttccatctctctatcgctgaaacgataaccaagaggaattgttatttttctc |
1508260 |
T |
|
| Q |
327 |
aacgatggccttgaaaat |
344 |
Q |
| |
|
|||||||||||||||||| |
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| T |
1508259 |
aacgatggccttgaaaat |
1508242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 12121806 - 12121696
Alignment:
| Q |
234 |
ttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacgatg |
333 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| || ||| | |||||||||||| || ||||| ||| |||||||| || |||| |
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| T |
12121806 |
ttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgatg |
12121707 |
T |
|
| Q |
334 |
gccttgaaaat |
344 |
Q |
| |
|
||||||||||| |
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|
| T |
12121706 |
gccttgaaaat |
12121696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 558242 - 558356
Alignment:
| Q |
228 |
gcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttctta |
327 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |||||||| |||||||||||| | |
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| T |
558242 |
gcacttttagattactagcagccaatgcatcctttacgcaataagagctccatctctctgtcgctgaaacgacaaggatatggagttgttaactttctca |
558341 |
T |
|
| Q |
328 |
acgatggccttgaaa |
342 |
Q |
| |
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| T |
558342 |
atgatggtcttgaaa |
558356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 1534319 - 1534234
Alignment:
| Q |
255 |
catccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacgatggccttga |
340 |
Q |
| |
|
|||||||| || ||||||||||||| || |||||||||||||||||| || ||||| ||||| ||| | || ||||||||||| |
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| T |
1534319 |
catccttggcgcaataagagttccatctccttgtcgctgaaacgataacgatctggagttgttacatttttcaatgatggccttga |
1534234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 342
Target Start/End: Complemental strand, 44575886 - 44575736
Alignment:
| Q |
199 |
ttacatttatgatttcaaaatacaatctagcactcttagaaaactagcaaacaatgcatcc-------ttgacgtgataagagttccatttctctgtcgc |
291 |
Q |
| |
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||||||||| || |||||| |||||| |||| | || ||| ||||||||||||||||||| |||||| |||||||||||||| ||| ||| | |
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| T |
44575886 |
ttacatttaagagttcaaactacaatgaagcaattttcgaatactagcaaacaatgcatcccttgacgttgacgcgataagagttccatctcttggtcac |
44575787 |
T |
|
| Q |
292 |
tgaaacgataaccatatggagatgttaactttcttaacgatggccttgaaa |
342 |
Q |
| |
|
||||| || || ||||||| |||||||||||| || ||||||||||||| |
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|
| T |
44575786 |
tgaaatcatcacgatatggaattgttaactttctcaatgatggccttgaaa |
44575736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 18315555 - 18315494
Alignment:
| Q |
242 |
ctagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataac |
303 |
Q |
| |
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||||||||||| ||||| |||||| || ||||||||| |||||||||| ||||||| ||||| |
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|
| T |
18315555 |
ctagcaaacaaggcatctttgacgcgagaagagttccctttctctgtcactgaaacaataac |
18315494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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