View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_41 (Length: 282)
Name: NF18926_high_41
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 43002127 - 43002389
Alignment:
| Q |
1 |
acggtatagcttgaattatatatacatatatagttggtaaatgagaggatgagtgttgaacaattg-ggttacatgccataataaaagtgtgtatagtag |
99 |
Q |
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| T |
43002127 |
acggtataccttgaattatatatacatatatagttggtaaatgagagggtgagtgttgaataattgaggttacatgccataataaaagtgtgtatagtag |
43002226 |
T |
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| Q |
100 |
tgcatatcaatgttttaaggagatttaaatgatactttatgtggaatggggaaggtagagtactgcacttgttttgttcctgtcatgacagtttcttggt |
199 |
Q |
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| T |
43002227 |
tgcataccaatgttttaaggagatttaaatgatactttatgtggaatggggaaggtagagtactgcacttgttttgttcctgtcatgacagtttcttggt |
43002326 |
T |
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| Q |
200 |
tttggcatatgtttgttttctttggtattctattagtagccattttatttggaatagggaaggta |
264 |
Q |
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| T |
43002327 |
tttggc--atgtttgttttctttggtattctattagtagccattttatttggaatggggaaggta |
43002389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 5512473 - 5512549
Alignment:
| Q |
4 |
gtatagcttgaattatatatacatatatagttggtaaatgagaggatgagtgttgaacaattg-ggttacatgccat |
79 |
Q |
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| T |
5512473 |
gtataccttgaattatatatagatatatagttggtaagtgaaagtgtgaatgttgaataattgaggttacatgccat |
5512549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2773189 - 2773092
Alignment:
| Q |
1 |
acggtatagcttgaatt--atatatacatatatagttggtaaatgagaggatgagtgttgaacaattg-ggttacatgccataataaaagtgtgtata |
95 |
Q |
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| T |
2773189 |
acggtacagcttgaattgtatatatacatatatagctggtaaatgagagggtgagtgttgaataattgaggttacatgccataacaaaagtgtgtata |
2773092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2773362 - 2773265
Alignment:
| Q |
1 |
acggtatagcttgaatt--atatatacatatatagttggtaaatgagaggatgagtgttgaacaattg-ggttacatgccataataaaagtgtgtata |
95 |
Q |
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| T |
2773362 |
acggtacagcttgaattgtatatatacatatatagctggtaaatgagagggtgagtgttgaataattgaggttacatgccataacaaaagtgtgtata |
2773265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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