View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_high_42 (Length: 276)

Name: NF18926_high_42
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_high_42
NF18926_high_42
[»] chr3 (2 HSPs)
chr3 (1-217)||(8343635-8343851)
chr3 (1-153)||(26729228-26729380)
[»] chr1 (6 HSPs)
chr1 (1-231)||(11543368-11543598)
chr1 (1-155)||(17810669-17810823)
chr1 (1-156)||(35900055-35900210)
chr1 (1-157)||(44145948-44146104)
chr1 (1-136)||(44613681-44613816)
chr1 (1-136)||(44794522-44794657)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-138)||(28163-28300)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-138)||(170492-170629)
scaffold0017 (17-156)||(181595-181734)
[»] chr5 (1 HSPs)
chr5 (1-217)||(29506473-29506689)
[»] chr2 (2 HSPs)
chr2 (30-153)||(29227878-29228001)
chr2 (30-153)||(29341177-29341300)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8343635 - 8343851
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8343635 atggattggagacaacttacatcaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcaaatctttgttatttgagaaaactt 8343734  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaattttcttacttcattagctgatgacaccatgaactcaacttcat 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8343735 catgtcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaattttcttacttcattagctgatgaccccatgaactcaacttcat 8343834  T
Q  201 caacggatcattcgtat 217  Q
    |||||| ||||| ||||    
T  8343835 caacgggtcattggtat 8343851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 26729228 - 26729380
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||| |  ||||  |||||| |||| |||||| ||||  ||||||||||| |||||||||||||||| ||| |||||||||||||||| |||    
T  26729228 atggattggagagagtttacggcaattaataatattaagccttcggttcaataacttctatggaagtataccttcaaatatttgttatttgagaaacctt 26729327  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgt 153  Q
        |||||||||| || |||||||||||||||||||| || ||| |||||||    
T  26729328 agagtcttggatctttccctaaataacttatcaggaggaatcccaacatgtgt 26729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11543598 - 11543368
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||  |  ||||||||| |||||||||||||| || ||| ||||||||||| ||||||||||||||| ||||| |||||||| ||||||||     
T  11543598 atggattggaggcagtttacaacaactagtaatcttaagcctttgagccaataacttcagtggaagtataccttcaaatctctgttatttaagaaaactg 11543499  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaattttcttacttcattagctgatgacaccatgaactcaacttcat 200  Q
    ||| |||| ||| |||| ||||||| ||||||||||||  |||| |||||||||||   | |||| ||  | ||||  ||||||||||||||||||||||    
T  11543498 catatcttagatatgtcactaaatagcttatcaggaggacttccgccatgtgtaaacaattttacatcgatggctgtagacaccatgaactcaacttcat 11543399  T
Q  201 caacggatcattcgtattcacccacgaattc 231  Q
     | ||||| ||||||||||||||| ||||||    
T  11543398 tagcggatgattcgtattcacccaagaattc 11543368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 17810823 - 17810669
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||| ||||||| || ||||| |||||||||||||||||  ||||| ||||||| || | ||||||||||||||| ||| | ||||||||||||||||||    
T  17810823 atgggttggagacaatttacaccaattagtaatcttaagtcttcgattcaataatttaagtggaagtataccttcaaatgtatgttatttgagaaaactt 17810724  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaa 155  Q
    |   | ||||||||||| |||||||||||||||||||| || ||| | |||||||    
T  17810723 cgagtattggatctgtcactaaataacttatcaggaggaatcccaacttgtgtaa 17810669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 35900055 - 35900210
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    ||||||||||||||  || || |||||| ||||||||||| ||||  ||||||| |||||||||||| ||||||| ||||| |||||||||||||| |||    
T  35900055 atggattggagatagtttgcaccaattaataatcttaagccttcggttcaataaattcaatggaagtctaccttcaaatctctgttatttgagaaatctt 35900154  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaa 156  Q
    ||| |||| ||| |||| || |||| |||||||||||| || ||| | ||||||||    
T  35900155 catgtcttagatttgtcacttaatagcttatcaggaggaatcccaacttgtgtaaa 35900210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 44145948 - 44146104
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaa-act 99  Q
    ||||||||||||||  ||||| |||||||||||||||||| | | | |||||||||||||||||||| ||||||| ||||| || ||||||| |||  ||    
T  44145948 atggattggagatagtttacaccaattagtaatcttaagcctccaattcaataacttcaatggaagtctaccttcaaatctctg-tatttgaaaaatcct 44146046  T
Q  100 tcatttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaat 157  Q
     ||  ||||||||||||| ||||||| |||||||||||| || ||| | |||||||||    
T  44146047 ccaagtcttggatctgtcactaaatagcttatcaggaggaatcccaacttgtgtaaat 44146104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 44613681 - 44613816
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||||| ||||||| | |||| |||||||||| |||||  |||||||||| |||||||| ||||||| ||||| ||||| |||| |||||||    
T  44613681 atggattggagatagcttacaaaatttagaaatcttaagccttcgatccaataacttctatggaagtttaccttcaaatctctgttacttgacaaaactt 44613780  T
Q  101 catttcttggatctgtcgctaaataacttatcagga 136  Q
    ||  |||||||| |||| || || ||| ||||||||    
T  44613781 caagtcttggatttgtcactgaacaacatatcagga 44613816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 44794657 - 44794522
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||||| ||||||| | |||| |||||||||| |||||  |||||||||| |||||||| ||||||| ||||| ||||| |||| |||||||    
T  44794657 atggattggagatagcttacaaaatttagaaatcttaagccttcgatccaataacttctatggaagtttaccttcaaatctctgttacttgacaaaactt 44794558  T
Q  101 catttcttggatctgtcgctaaataacttatcagga 136  Q
    ||  |||||||| |||| || || ||| ||||||||    
T  44794557 caagtcttggatttgtcactgaacaacatatcagga 44794522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28300 - 28163
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |||||||    
T  28300 atggattggagacaacttacgacaattagtaatcttaagccttcgattcaataacttcaatggaagtctaccttcaaatctatgttatttgacaaaactt 28201  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagg 138  Q
    ||| |||| ||| |||| |||||||| |||||||||||    
T  28200 catgtcttagatatgtcactaaataatttatcaggagg 28163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 170492 - 170629
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |||||||    
T  170492 atggattggagacaacttacgacaattagtaatcttaagccttcgattcaataacttcaatggaagtctaccttcaaatctatgttatttgacaaaactt 170591  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagg 138  Q
    ||| |||| ||| |||| |||||||| |||||||||||    
T  170592 catgtcttagatatgtcactaaataatttatcaggagg 170629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 181595 - 181734
Alignment:
Q  17 ttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaacttcatttcttggatctgt 116  Q
    ||||| |||||||||||||||||| ||||| |||| ||||||||||||| | | ||||| ||||| |||||||||| |||||||||| ||||||||||||    
T  181595 ttacaccaattagtaatcttaagccttcgattcaacaacttcaatggaattcttccttcaaatctctgttatttgacaaaacttcatgtcttggatctgt 181694  T
Q  117 cgctaaataacttatcaggagggattccaccatgtgtaaa 156  Q
    |  |||||| |||||||||||| || ||| | ||||||||    
T  181695 ccgtaaatagcttatcaggaggaatcccaacttgtgtaaa 181734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29506689 - 29506473
Alignment:
Q  1 atggattggagataacttacaacaattagtaatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaactt 100  Q
    |||||||||||| |  ||||| || ||| ||||||||||| ||||| ||||| | ||||| | |||  | ||||| || || |||||||||||| |||||    
T  29506689 atggattggagacagtttacaccagttaataatcttaagccttcgactcaatgatttcaacgaaagcctgccttcaaacctatgttatttgagagaactt 29506590  T
Q  101 catttcttggatctgtcgctaaataacttatcaggagggattccaccatgtgtaaattttcttacttcattagctgatgacaccatgaactcaacttcat 200  Q
    ||  |||||||| |||| ||||||| |||||||||||| || ||| ||||||||||   | |||||||| | ||| | | ||||||||||||||||||||    
T  29506589 caagtcttggatttgtcactaaatagcttatcaggaggaatcccaacatgtgtaaagaattttacttcaatggctcagggcaccatgaactcaacttcat 29506490  T
Q  201 caacggatcattcgtat 217  Q
      ||| |||||||||||    
T  29506489 tgacgtatcattcgtat 29506473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 29228001 - 29227878
Alignment:
Q  30 taatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaacttcatttcttggatctgtcgctaaataactt 129  Q
    ||||||||||| |||||   || | ||||||||||||| || |||| ||||| |||||||||||| |||||||  | || |||||||| ||||||| |||    
T  29228001 taatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctgttatttgagagaacttcaagtattagatctgtcactaaatagctt 29227902  T
Q  130 atcaggagggattccaccatgtgt 153  Q
     |||||||| |||||| |||||||    
T  29227901 ctcaggaggaattccatcatgtgt 29227878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 29341300 - 29341177
Alignment:
Q  30 taatcttaagcattcgagtcaataacttcaatggaagtataccttcgaatctttgttatttgagaaaacttcatttcttggatctgtcgctaaataactt 129  Q
    ||||||||||| |||||   || | ||||||||||||| || |||| ||||| |||||||||||| |||||||  | || |||||||| ||||||| |||    
T  29341300 taatcttaagccttcgatctaacagcttcaatggaagtctagcttcaaatctctgttatttgagagaacttcaagtattagatctgtcactaaatagctt 29341201  T
Q  130 atcaggagggattccaccatgtgt 153  Q
     |||||||| |||||| |||||||    
T  29341200 ctcaggaggaattccatcatgtgt 29341177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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