View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_high_46 (Length: 260)

Name: NF18926_high_46
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_high_46
NF18926_high_46
[»] chr4 (4 HSPs)
chr4 (1-241)||(43609778-43610018)
chr4 (1-226)||(6936206-6936431)
chr4 (23-225)||(25658655-25658858)
chr4 (121-239)||(1470356-1470474)
[»] chr1 (3 HSPs)
chr1 (1-239)||(25141066-25141304)
chr1 (3-142)||(10165424-10165563)
chr1 (119-187)||(16988659-16988727)
[»] chr2 (7 HSPs)
chr2 (48-239)||(30938861-30939052)
chr2 (1-225)||(10990855-10991069)
chr2 (168-239)||(26831982-26832053)
chr2 (49-119)||(26832052-26832122)
chr2 (23-151)||(25850315-25850443)
chr2 (33-151)||(25194798-25194917)
chr2 (33-103)||(18815383-18815453)
[»] chr3 (6 HSPs)
chr3 (22-150)||(16293642-16293771)
chr3 (121-238)||(21544217-21544334)
chr3 (37-109)||(50540635-50540707)
chr3 (1-91)||(35443505-35443595)
chr3 (36-150)||(16279591-16279706)
chr3 (43-91)||(39964814-39964862)
[»] chr7 (1 HSPs)
chr7 (61-147)||(20904487-20904573)
[»] chr8 (3 HSPs)
chr8 (182-225)||(17342324-17342367)
chr8 (23-117)||(17342194-17342288)
chr8 (194-225)||(17318781-17318812)
[»] chr6 (4 HSPs)
chr6 (36-151)||(11705102-11705216)
chr6 (170-220)||(31177905-31177955)
chr6 (22-109)||(31177781-31177869)
chr6 (22-109)||(31198393-31198481)
[»] chr5 (1 HSPs)
chr5 (69-151)||(17217697-17217780)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43609778 - 43610018
Alignment:
Q  1 ggaaaacggtttattttccttgggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||    
T  43609778 ggaaaacggtttattttcctcgggttattcacgacgatagcaacgtagaatttatgtttgggtcgattgttgaaaataatgtgttatatctcagtgttcg 43609877  T
Q  101 ttcgaactgtaggtgcccagattgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgct 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||     
T  43609878 ttcgaactgtaggtgtccagattgtcaatagagatttgatgtcatttagtggacttttaactttattcgtgtattgttgtataatgtgttgtttaatgca 43609977  T
Q  201 tcacttttgttgaatttcaaacattcatttaatgttaacat 241  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  43609978 tcacttttattgaatttcaaacattcgtttaatgttaacat 43610018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6936431 - 6936206
Alignment:
Q  1 ggaaaacggtttattttccttgggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcg 100  Q
    ||||||| ||||||| ||||   |||||||  ||||||||| || |||||||||||||| ||||||  ||||||||||||||||| ||||| ||| ||||    
T  6936431 ggaaaacagtttattctcctcatgttattcgtgacgatagcgacatagaatttatgtttaggtcgacggttgaaaataatgtgttgtatctttgtgttcg 6936332  T
Q  101 ttcgaactgtaggtgcccagattgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgct 200  Q
    ||| ||||| || | | |||||| ||||||||||||| ||||||||| || | | |||||||| |||  |||| | |||| |||||||||||||||||||    
T  6936331 ttccaactgcagctacacagattctcaatagagatttaatgtcattttgtcggcttttaactttatttgtgtagtattgtgtaatgtgttgtttaatgct 6936232  T
Q  201 tcacttttgttgaatttcaaacattc 226  Q
    |||||||||||||||||||| |||||    
T  6936231 tcacttttgttgaatttcaatcattc 6936206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 25658858 - 25658655
Alignment:
Q  23 ggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagat 122  Q
    ||||||||| || |||||  ||||||||| ||||||| ||||  | ||||||||||||  ||||||||| ||| ||||||| ||||| || |||  ||||    
T  25658858 ggttattcatgatgatagtgacgtagaatatatgtttaggtctgtggttgaaaataataggttatatctatgtgttcgttccaactgcagctgcttagat 25658759  T
Q  123 tgtcaatagagatttgatgtcatttagtggacgttt-aacttaattcatgtattgttgtataatgtgttgtttaatgcttcacttttgttgaatttcaaa 221  Q
    |  || |||||||||||||||||||  ||  | ||| ||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||    
T  25658758 taccagtagagatttgatgtcattttatgagctttttaactttattcatgtattgttgtgtaatgtgttgtctaatgcttcactttggttgaattttaaa 25658659  T
Q  222 catt 225  Q
    ||||    
T  25658658 catt 25658655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 1470356 - 1470474
Alignment:
Q  121 attgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgcttcacttttgttgaatttcaa 220  Q
    ||||||| |||||||||||||| |||| || ||| |||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||    
T  1470356 attgtcagtagagatttgatgtaattttgtagacttttaactttattcgtgtattgttgtgtaatgtgttgtccaatgcttcacttttgttgaatttcaa 1470455  T
Q  221 acattcatttaatgttaac 239  Q
    |||||| | ||||||||||    
T  1470456 acattcgtgtaatgttaac 1470474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 25141066 - 25141304
Alignment:
Q  1 ggaaaacggtttattttccttgggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcg 100  Q
    |||||||  |||||| |||| ||||||||   |||||||||  | | ||| ||| |||| | ||||| ||||||||||||||||||||||| ||| ||||    
T  25141066 ggaaaacaatttattatcctcgggttatttgtgacgatagcgtcattgaacttaagtttagatcgatggttgaaaataatgtgttatatctttgtgttcg 25141165  T
Q  101 ttcgaactgtaggtgcccagattgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgct 200  Q
    ||| ||||| |  |||||||||||||| |||||||||||| ||||||  ||| | |||||||| |||| |||||||| || |||||||||| ||||||||    
T  25141166 ttctaactgcaactgcccagattgtcattagagatttgatttcattttatgggcttttaactttattcgtgtattgtagtgtaatgtgttgcttaatgct 25141265  T
Q  201 tcacttttgttgaatttcaaacattcatttaatgttaac 239  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  25141266 tcacttttgttgaatttcaaacattcgtgtaatgttaac 25141304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 10165424 - 10165563
Alignment:
Q  3 aaaacggtttattttccttgggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgtt 102  Q
    ||||||||||||||||||  |||| ||   || |||||| | ||||||||||||||| ||||||| |||||||||||| | |||||||| ||| | ||||    
T  10165424 aaaacggtttattttcctcaggttgtttgtgatgatagcgatgtagaatttatgtttaggtcgatggttgaaaataatatattatatctttgtgtccgtt 10165523  T
Q  103 cgaactgtaggtgcccagattgtcaatagagatttgatgt 142  Q
    | ||||| | ||||| ||| ||||  ||||||||| ||||    
T  10165524 ccaactgcatgtgccaagaatgtctgtagagatttcatgt 10165563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 16988659 - 16988727
Alignment:
Q  119 agattgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgt 187  Q
    ||||||| | ||||||||||||||||||| |||| | |||||||| |||  ||||||||||| ||||||    
T  16988659 agattgtgagtagagatttgatgtcattttgtgggcttttaactttatttgtgtattgttgtgtaatgt 16988727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 30938861 - 30939052
Alignment:
Q  48 gaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagattgtcaatagagatttgatgtcattt 147  Q
    |||||||||||| ||||||| ||| ||||||||||| ||||||||||| || |||| ||||| || |||||| |||||   |||||||||||||||||||    
T  30938861 gaatttatgtttaggtcgatggttaaaaataatgtgctatatctctgtgtttgttccaactgcagctgcccatattgtatgtagagatttgatgtcattt 30938960  T
Q  148 agtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgcttcacttttgttgaatttcaaacattcatttaatgttaac 239  Q
        | | |||||||| |||| ||||||||||| ||||||||||| ||||| |||| ||||||| |||||||||||||| | ||||||||||    
T  30938961 tacaggcttttaactttattcgtgtattgttgtgtaatgtgttgtctaatgtttcatttttgttaaatttcaaacattcgtgtaatgttaac 30939052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10990855 - 10991069
Alignment:
Q  1 ggaaaacggtttattttccttgggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcg 100  Q
    ||||||||||||||  ||||| | ||||||  || |||||| || || ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  10990855 ggaaaacggtttatcatccttagattattcgtgaggatagcgacatataatttatgtttaggtcgatggttgaaaataatgtgttatatctctgtgttcg 10990954  T
Q  101 ttcgaactgtaggtgcccagattgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgct 200  Q
    ||| ||||| |  || ||||||||||| || ||||||||||||||||  ||  | |||||||| |||||||          ||||||||| | |||||||    
T  10990955 ttccaactgcaactgtccagattgtcagtatagatttgatgtcatttcatgagcttttaactttattcatg----------taatgtgttatctaatgct 10991044  T
Q  201 tcacttttgttgaatttcaaacatt 225  Q
    |||||||| ||||||||||| ||||    
T  10991045 tcacttttattgaatttcaatcatt 10991069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 26832053 - 26831982
Alignment:
Q  168 catgtattgttgtataatgtgttgtttaatgcttcacttttgttgaatttcaaacattcatttaatgttaac 239  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||  | ||||||||||    
T  26832053 catgtattgttgtgtgatgtgttgcttaatgcttcacttttgttgaatttcaaacatttgtgtaatgttaac 26831982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 26832122 - 26832052
Alignment:
Q  49 aatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgccca 119  Q
    ||||||||||| ||||||| |||||||||||||| |||||||| ||| ||| ||| |||||||| ||||||    
T  26832122 aatttatgtttaggtcgatggttgaaaataatgttttatatctttgtgttcattccaactgtagctgccca 26832052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 25850443 - 25850315
Alignment:
Q  23 ggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagat 122  Q
    ||||||||  ||||||| | |||||| |||||||||| ||  |||  |||||| |||||||||| | |||||| ||||||| ||||| || |||| |||     
T  25850443 ggttattcgtgacgataacgacgtaggatttatgtttaggaggatgattgaaa-taatgtgttacacctctgtgttcgttccaactgcagctgcctagaa 25850345  T
Q  123 tgt-caatagagatttgatgtcatttagtg 151  Q
    ||| ||| ||||||||||||||||||||||    
T  25850344 tgttcaagagagatttgatgtcatttagtg 25850315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 25194917 - 25194798
Alignment:
Q  33 gacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagattg-tcaatag 131  Q
    ||||||||  |||||| |||||||||| ||  | | ||||||||||||||||||||||| | | ||||||| ||||| ||||||  ||| || |||  ||    
T  25194917 gacgatagtgacgtaggatttatgtttaggaggtttgttgaaaataatgtgttatatctatatgttcgttccaactgcaggtgcatagaatgttcatgag 25194818  T
Q  132 agatttgatgtcatttagtg 151  Q
    ||||||||||| ||||||||    
T  25194817 agatttgatgtgatttagtg 25194798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 18815383 - 18815453
Alignment:
Q  33 gacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttc 103  Q
    ||||||||  |||||| |||||||||| ||  | | |||||||||||||||||| ||||||||||||||||    
T  18815383 gacgatagtgacgtaggatttatgtttaggaggttagttgaaaataatgtgttacatctctgtattcgttc 18815453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 16293642 - 16293771
Alignment:
Q  22 gggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccaga 121  Q
    |||||||||| ||||||||| || |||||||||||||| ||  |||| ||||||||||||||||| |||| ||| || |||  ||||| ||||||| |||    
T  16293642 gggttattcatgacgatagcgacatagaatttatgtttaggaggatctttgaaaataatgtgttacatctttgtgtttgtttcaactgcaggtgcctaga 16293741  T
Q  122 ttg-tcaatagagatttgatgtcatttagt 150  Q
     || |||  ||| |||||||||||||||||    
T  16293742 atgttcatgagatatttgatgtcatttagt 16293771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 21544217 - 21544334
Alignment:
Q  121 attgtcaatagagatttgatgtcatttagtggacgtttaacttaattcatgtattgttgtataatgtgttgtttaatgcttcacttttgttgaatttcaa 220  Q
    ||||||| |||||||||||| || |||  ||| | |||||||| ||| |||||||||||| ||||||||    ||||| | ||||||| |||||||||||    
T  21544217 attgtcagtagagatttgatatcgttttatgggcttttaactttatttatgtattgttgtgtaatgtgtatcctaatgttgcactttttttgaatttcaa 21544316  T
Q  221 acattcatttaatgttaa 238  Q
    |||||  | |||||||||    
T  21544317 acatttgtgtaatgttaa 21544334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 50540635 - 50540707
Alignment:
Q  37 atagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactg 109  Q
    ||||| |||||| |||||||||| ||  ||| |||||||||||||||||| |||||||| ||||||| |||||    
T  50540635 atagcgacgtaggatttatgtttaggaggatggttgaaaataatgtgttacatctctgtgttcgttccaactg 50540707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35443595 - 35443505
Alignment:
Q  1 ggaaaacggtttattttccttgggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatct 91  Q
    |||||||||| ||||||||| ||||| |||  ||||||| |||||||| |||||||||| ||   || |||||||||||| | ||||||||    
T  35443595 ggaaaacggtctattttcctcgggttgttcgtgacgataacaacgtaggatttatgtttaggcatatggttgaaaataatatattatatct 35443505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 16279591 - 16279706
Alignment:
Q  36 gatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagattg-tcaatagaga 134  Q
    |||||| ||||||  ||||||||| ||  ||| | |||||||||||||||| || | ||| ||| ||| ||||||||||| | ||| || |||  |||||    
T  16279591 gatagcgacgtagggtttatgtttaggaggatggatgaaaataatgtgttacatatgtgtgttcattctaactgtaggtgactagaatgttcaggagaga 16279690  T
Q  135 tttgatgtcatttagt 150  Q
    ||||||||||||||||    
T  16279691 tttgatgtcatttagt 16279706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 39964862 - 39964814
Alignment:
Q  43 acgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatct 91  Q
    ||||||||| ||||||| ||||||| ||||||||||||  |||||||||    
T  39964862 acgtagaatctatgtttaggtcgatggttgaaaataatacgttatatct 39964814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 20904573 - 20904487
Alignment:
Q  61 ggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagattgtcaatagagatttgatgtcattt 147  Q
    ||||||| ||||||||||| ||||||| ||||||| ||||||| ||||| |  || ||| ||||||||| |||||||||||||||||    
T  20904573 ggtcgatggttgaaaataacgtgttatgtctctgtgttcgttcaaactgcaattgaccaaattgtcaatggagatttgatgtcattt 20904487  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 17342324 - 17342367
Alignment:
Q  182 taatgtgttgtttaatgcttcacttttgttgaatttcaaacatt 225  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  17342324 taatgtgttgcataatgcttcacttttgttgaatttcaaacatt 17342367  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 17342194 - 17342288
Alignment:
Q  23 ggttattcacgacgatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcc 117  Q
    ||||||||  ||||||||| |||||  |||||||||| ||  ||| | |||||||||||||||| |||||||| ||||||| ||||  |||||||    
T  17342194 ggttattcgtgacgatagcgacgtaagatttatgtttaggatgatggctgaaaataatgtgttacatctctgtgttcgttccaactacaggtgcc 17342288  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 225
Target Start/End: Original strand, 17318781 - 17318812
Alignment:
Q  194 taatgcttcacttttgttgaatttcaaacatt 225  Q
    ||||||||||||||||||||||||||||||||    
T  17318781 taatgcttcacttttgttgaatttcaaacatt 17318812  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 11705102 - 11705216
Alignment:
Q  36 gatagcaacgtagaatttatgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagattgtcaatagagat 135  Q
    |||||| ||||||||||||| ||| |  | || |||||||||||||| ||||||||| |||||| ||| |||   ||||| | ||| ||||  |||||||    
T  11705102 gatagcgacgtagaatttatctttagaacaatggttgaaaataatgtcttatatctcagtattcattccaaccccaggtg-ctagaatgtccgtagagat 11705200  T
Q  136 ttgatgtcatttagtg 151  Q
    ||||||||||||||||    
T  11705201 ttgatgtcatttagtg 11705216  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 31177905 - 31177955
Alignment:
Q  170 tgtattgttgtataatgtgttgtttaatgcttcacttttgttgaatttcaa 220  Q
    ||||| ||||| ||||||||||| ||||| | |||||||||||||||||||    
T  31177905 tgtatcgttgtgtaatgtgttgtctaatgttgcacttttgttgaatttcaa 31177955  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 31177781 - 31177869
Alignment:
Q  22 gggttattcacgacgatagcaacgtagaattt-atgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactg 109  Q
    |||||||||  ||||||||| || |||| ||| |||||| |||| || |||||||||| | |||||||||||| | ||||||| |||||    
T  31177781 gggttattcgtgacgatagcgacatagatttttatgtttaggtctatggttgaaaatattatgttatatctctatgttcgttcaaactg 31177869  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 31198393 - 31198481
Alignment:
Q  22 gggttattcacgacgatagcaacgtagaattt-atgtttgggtcgatcgttgaaaataatgtgttatatctctgtattcgttcgaactg 109  Q
    |||||||||  ||||||||| || |||| ||| |||||| |||| || |||||||||| | |||||||||||| | ||||||| |||||    
T  31198393 gggttattcgtgacgatagcgacatagatttttatgtttaggtctatggttgaaaatattatgttatatctctatgttcgttcaaactg 31198481  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 17217780 - 17217697
Alignment:
Q  69 gttgaaaataatgtgttatatctctgtattcgttcgaactgtaggtgcccagattg-tcaatagagatttgatgtcatttagtg 151  Q
    ||||||||||||||||||||||| | | ||||||| || || ||||||  ||| || |||  ||||||||||||||||||||||    
T  17217780 gttgaaaataatgtgttatatctatatgttcgttccaattgcaggtgcgtagaatgttcacgagagatttgatgtcatttagtg 17217697  T

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