View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_high_48 (Length: 256)
Name: NF18926_high_48
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_high_48 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 41247821 - 41247583
Alignment:
| Q |
16 |
atgaagtactatatgttaaaattacaaagagatcgctataataaagttagtaatttactaaaacaagtaaaattcnnnnnnnnnnaagagaaaacaagta |
115 |
Q |
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| T |
41247821 |
atgaagtactatatgttaaaattacaaagagatcgctataataaagttagtactttactaaaacaagtaaaaaa-aaatttttttaagggaaaacaagta |
41247723 |
T |
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| Q |
116 |
aaattcttgttgtgggnnnnnnnntctgaaataattactaagagaattcaaattttattccnnnnnnntaattaaattaagatttcagtcaaactaatta |
215 |
Q |
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| T |
41247722 |
aaattcttgttgtgggaaaaaaa-tctgaaataattactaagagaattcaaattttattccaaaaaaataattaaattaagatttcagtcaaactaatta |
41247624 |
T |
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| Q |
216 |
attgtttttgaaagtcggtcaaaagtaattaatgacacttt |
256 |
Q |
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| T |
41247623 |
attgtttgtgaaagtcggtcaaaagtaattaatgacacttt |
41247583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 41239983 - 41240203
Alignment:
| Q |
32 |
taaaattacaaagagatcgctataataaagttagtaatttactaaaacaagtaaaattcnnnnnnnnnnaagagaaaacaagtaaaattcttgttgtggg |
131 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
41239983 |
taaaattacaaagagatcactatattaaagttagtaatttactaaaacaagtaaaa-----aaaatgtgaggggaaaacaagtaaaattcttgttgtggg |
41240077 |
T |
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| Q |
132 |
--nnnnnnnntctgaaataattactaagagaattcaaattttattccnnnnnnntaattaaa-----ttaagatttcagtcaaactaattaattgttttt |
224 |
Q |
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| T |
41240078 |
aaaaaaaaaatctgaaataattaataagagaattcaaattctattcctataaaataattaaatactgtaaagctttcggtcaaactaattaattgttttt |
41240177 |
T |
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| Q |
225 |
gaaagtcggtcaaaagtaattaatga |
250 |
Q |
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| T |
41240178 |
gaaagtcggtcaaaaataattaatga |
41240203 |
T |
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