View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_1 (Length: 1051)
Name: NF18926_low_1
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Complemental strand, 42339900 - 42339184
Alignment:
| Q |
1 |
ctctaattctaatttagattatttaatattatccaaacatgatcaattgttggtcttgattctcgagttcactgaatttcacatagaaaatccaatattt |
100 |
Q |
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| T |
42339900 |
ctctaattctaatttagattatttaatattatccaaacatgatcaattgttggtcttgattctcgagttcactgaatttcacatagaaaatccaatattt |
42339801 |
T |
|
| Q |
101 |
gatcagaacccagctcaaaagtaagcagatactgcaccaccatcgctctatcaatg-aataattgaatatcgaagcaactactacttttattattcggta |
199 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42339800 |
gatcagaacc-agctcaaaagtaagcagaaactgcaccaccatcgctctatcaatggaataattgaatatcgaagcaactactacttttattattcggta |
42339702 |
T |
|
| Q |
200 |
caaaaagaatgcttcagtgcaaagaaaacttcacacttcagatctatttatgacaacatattatttttaaaaacgtaatttacttgggataatgttaaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42339701 |
caaaaagaatgcttcagtgcaaagaaaacttcacacttcagatctatttatgacaacatattattttaaaaaacgtaatttacttgggataatgttaaat |
42339602 |
T |
|
| Q |
300 |
tttatcaaattaaataattttttctgctaaaaatgnnnnnnnnnnnnnnnnnnnnnnatataattataggttgacaattcttgggcacataaagttgatt |
399 |
Q |
| |
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| T |
42339601 |
tttatcaaattaaataattttttctgctaaaaatgttttttattttatttt------atataattataggttgacaattcttaggcacataaagttgatt |
42339508 |
T |
|
| Q |
400 |
tactcttccaactaatttttctatactcttcatttaagtagaagaactatcaaattcaaaagcacttgatcctatagctaccttataacttgaattttat |
499 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42339507 |
tactcttccaactaatttttctatactcttcatt-aagtagaagaactatcaaattcaaaagcacttgatcctatagctaccttataacttgaattttat |
42339409 |
T |
|
| Q |
500 |
tctagagaataaaaagactatttatgcacatgcattaaaaatacaagggttgtttttggatgatcggttgaaaaactgtaataaattaagttgtgaggaa |
599 |
Q |
| |
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||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42339408 |
tctagagaataaaaagattctttattcacatgcattaaaagtacaagggttgtttttggatgatcggttgaaaaactataataaattaagttgtgaggaa |
42339309 |
T |
|
| Q |
600 |
tatttggtgggtgtagaaaaggattgatgtttgtacacaaaaggaaaagaatgttgcctcatttggaaatgatttggtggccaaatgaaggaagagatag |
699 |
Q |
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| T |
42339308 |
tatttggtgggtgtagaaaaggattgatgtttgtacacaaaaggaaaagaatgttgcctcatttggaaatgatttggtggccaaatgaaggaagagatag |
42339209 |
T |
|
| Q |
700 |
aataaaataatgtataataacaaaa |
724 |
Q |
| |
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|||||| |||| ||||||||||||| |
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| T |
42339208 |
aataaattaatctataataacaaaa |
42339184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 770 - 1031
Target Start/End: Complemental strand, 42339118 - 42338857
Alignment:
| Q |
770 |
aaaactcaaatgcttgcactaattaacgttcaaaattataggtaatccaatgaaatcaaaccaaaaacgttcacaaagcttccatgcatataacaaaata |
869 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42339118 |
aaaactcaaatgcttgcactaattaacgttcaaaattataggtaatccaatgaaatcaaaccaaaaacgttcacaaagtttccatgcatataacaaaata |
42339019 |
T |
|
| Q |
870 |
tagagaaatagtatattgataagatcattatttcctttgaatcaaagttttggagagaaatatacctggaaatgcaagttgaaatgttaagctccttttg |
969 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42339018 |
tagagaaatagtatattgatgagatcattatttcctttgaatcaaacttttggagagaaatatacctggaaatgcaagttgtaatgttaagctccttttg |
42338919 |
T |
|
| Q |
970 |
tctcaatgtcgaaagttttagagcttacttaagaagatagtgaggctaaatagtgagcaaag |
1031 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42338918 |
tctcaatgtcaaaagttttagagcttacttaagaagatagtgaggctgaatagtgagcaaag |
42338857 |
T |
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