View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_10 (Length: 568)
Name: NF18926_low_10
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 60 - 551
Target Start/End: Original strand, 25892468 - 25892958
Alignment:
| Q |
60 |
aaaggttcgagaaatcttgagttggaatagttcattagtagttagtaagtcttgttatctctgcttttagtagtaatagttcattagtcccatggactct |
159 |
Q |
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| T |
25892468 |
aaaggttcgagaaatcttgagttggaatagttcattagtagttagtaagtcttgttatctctgcttttagta---atagttcattagtcccatggactct |
25892564 |
T |
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| Q |
160 |
tcaaaataggtggcttaattgtattgagcttactcaaaatgtttatatattttctcatacttaaagagtgggcaacatgaaaatgaaagtactatagcat |
259 |
Q |
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| T |
25892565 |
tcaaaataggtggcttaattgtattgagcttactcaaaatgtttatatattttctcatacttaaagaatgggcaacatgaaaatgaaagtactataacat |
25892664 |
T |
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| Q |
260 |
aaatggaaaaactgattatgaaaagttataccttttccttatttaaattgcaacataggaaaagtaaattgtatatataaaa--aacaacagtgctcgtt |
357 |
Q |
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| T |
25892665 |
aaatggaaaaactgattatgaaaagtaataccttttccttatttaaattgcaacataggaaaagtaaattgtatatataaaaaaaacaacagtgctcgtt |
25892764 |
T |
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| Q |
358 |
gagtgactttcctcaaaaagtcatcaagaaataaatggcatggctgaaaatttccattcacttagttgcttccatcttcatattttagtgagaatcctct |
457 |
Q |
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| T |
25892765 |
gagtgactttcctcaaaaagtcatcaagaaataaatggcatggctgaaaatttccattcacatagttgcttccatcttcatattttagtgagaatcctct |
25892864 |
T |
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| Q |
458 |
tcaatacaataatcctatttgctccagaaaaatatatcacaattatgagtccagggtatgtagtgtacataatcaagagtacactttacatatg |
551 |
Q |
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| T |
25892865 |
tcaatacaataatcctatttgctccagaaaaatatatcacaattatgagtccagggtatgtagtgtacataatcaagagtacactttacatatg |
25892958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 25892406 - 25892446
Alignment:
| Q |
19 |
tatttagaatgcttttcatgctgaacttataagagctatgc |
59 |
Q |
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| T |
25892406 |
tatttggaatgcttttcatgctgaacttataagagctatgc |
25892446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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