View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_12 (Length: 538)
Name: NF18926_low_12
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 43514380 - 43513867
Alignment:
| Q |
11 |
cacagactagctttgcatctttaccagggatgtggggtaaaactctaaccgtgaatggattttctaaggttagtccatatgtcattttctctttctgtta |
110 |
Q |
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| T |
43514380 |
cacacactagctttgcatctttaccggggatgtggggtaaaactctaaccgtgaatggattttctaaggttagtccatatgtcattttctctttctgtta |
43514281 |
T |
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| Q |
111 |
tagataaatatcaagtgattcttatctgttaatcaatgttatgttgcatctcctagtatggttataaattatgaaataaacttggatgatcctaaggctt |
210 |
Q |
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| T |
43514280 |
tagataaatatcaagtgattcttatctgttaatcaatgttatgttgcatctcctagtatggttataaattatgaaataaacttggatgatcctaaggctt |
43514181 |
T |
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| Q |
211 |
ctaannnnnnnactgcagccctttgcaatgactggttggcggcttggttatattgcaggcccgaaacattttatttcagcatgtggaaagattcaaagtc |
310 |
Q |
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| T |
43514180 |
ctaatttttttactgcagccctttgcaatgactggttggcggcttggttatattgcaggcccgaaacattttatttcagcatgtggaaagattcaaagtc |
43514081 |
T |
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| Q |
311 |
aggtatgctgacttgcaacatctgttaagccgtattctaagcttcatcttatcttgatttcctcttgctacaaggcatgcaaaaggtccttagccctttt |
410 |
Q |
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| T |
43514080 |
aggtatgctgacttgcaacatctgttaagccgtattctaagcttcatcttatcttgatttcctcttgctacaaggcatgcaaaaggttcttagccc-ttt |
43513982 |
T |
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| Q |
411 |
aagtttaaccatattcgttatttgagagtgaactttaagaaacttcggtgcatacatttggttatttttaatattatattatgtgcagtttttagtagct |
510 |
Q |
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| T |
43513981 |
aagtttaaccatattcgttatttgagagtgaactttaagaaacttcggtgcatacatttggttatttttgatattatattatgtgcagtttttagtagct |
43513882 |
T |
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| Q |
511 |
gacatatcttattga |
525 |
Q |
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| T |
43513881 |
gacatatcttattga |
43513867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 38103750 - 38103605
Alignment:
| Q |
225 |
gcagccctttgcaatgactggttggcggcttggttatattgcaggcccgaaacattttatttcagcatgtggaaagattcaaagtcaggtatgctgactt |
324 |
Q |
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| T |
38103750 |
gcaggcctttgcaatgacgggttggcggcttggatatattgctggcccgaagcattttattgcagcagtcggaaagatccaaagtcaggtatgttgactc |
38103651 |
T |
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| Q |
325 |
gcaacatctgttaagccgtattctaagcttcatcttatcttgatttc |
371 |
Q |
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| T |
38103650 |
gccacatttg-tcagccttattctatgcatcatcttgacttgatttc |
38103605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 38103999 - 38103912
Alignment:
| Q |
19 |
agctttgcatctttaccagggatgtggggtaaaactctaaccgtgaatggattttctaaggttagtccatatgtcattttctctttct |
106 |
Q |
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||||||||||||||||| | |||||| || ||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
38103999 |
agctttgcatctttacctagaatgtggaatagaactctaaccgtgaacggattttctaaggttagtttgtatgtcatgttctctttct |
38103912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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