View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_14 (Length: 533)

Name: NF18926_low_14
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_14
NF18926_low_14
[»] chr8 (16 HSPs)
chr8 (7-533)||(12651870-12652384)
chr8 (7-531)||(12646738-12647268)
chr8 (425-489)||(6117901-6117965)
chr8 (419-488)||(13024766-13024835)
chr8 (423-484)||(12711784-12711845)
chr8 (425-484)||(12705780-12705839)
chr8 (416-488)||(12709895-12709967)
chr8 (187-263)||(12711996-12712072)
chr8 (417-495)||(12724898-12724976)
chr8 (419-482)||(18096701-18096764)
chr8 (448-495)||(26607096-26607143)
chr8 (106-144)||(12516863-12516901)
chr8 (434-492)||(27230284-27230342)
chr8 (186-275)||(37830624-37830714)
chr8 (187-263)||(6117660-6117736)
chr8 (434-490)||(27183909-27183965)
[»] chr2 (4 HSPs)
chr2 (421-488)||(44912518-44912585)
chr2 (434-491)||(13281097-13281154)
chr2 (420-488)||(44918483-44918551)
chr2 (420-488)||(44937794-44937862)
[»] chr4 (6 HSPs)
chr4 (409-488)||(44186102-44186181)
chr4 (419-488)||(9569202-9569271)
chr4 (419-482)||(37875647-37875710)
chr4 (454-488)||(20426657-20426691)
chr4 (420-477)||(4877805-4877862)
chr4 (420-476)||(1327266-1327322)
[»] scaffold0129 (3 HSPs)
scaffold0129 (434-495)||(33541-33602)
scaffold0129 (437-495)||(17145-17203)
scaffold0129 (420-476)||(10486-10542)
[»] chr5 (4 HSPs)
chr5 (434-495)||(42414011-42414072)
chr5 (421-491)||(30651574-30651644)
chr5 (421-491)||(31777920-31777990)
chr5 (434-495)||(42840503-42840564)
[»] scaffold0831 (1 HSPs)
scaffold0831 (416-491)||(1313-1388)
[»] chr3 (1 HSPs)
chr3 (434-484)||(2703738-2703788)
[»] chr1 (3 HSPs)
chr1 (105-143)||(22535511-22535549)
chr1 (439-495)||(368825-368881)
chr1 (434-498)||(19219173-19219237)


Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 533
Target Start/End: Original strand, 12651870 - 12652384
Alignment:
Q  7 gagacgaatagccctttctgggagatggacttggaatttgatgataatgatgatttttgggagggtgttccaatatatatgtatgaccctaattattagg 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  12651870 gagatgaatagccctttctgggagatggacttggaatttgatgataatgatgatttttgggagggtgtgccaatatatatgtatgaccctaattattggg 12651969  T
Q  107 agatatacagcctgagaagtaactcttagaggaaactcaacggtgatgtaatgccttcttcttgggaggagcgttgtcaagtgaacttgaatgaattttg 206  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12651970 agatatacagcctcagaagtaactcttggaggaaactcaacggtgatgtaatgccttcttcttgggaggagcgttgtcaagtgaacttgaatgaattttg 12652069  T
Q  207 tcattggttgggcctagataatgatatggggtcgtttgactttatcaattagatattttttgtaacaaacttatcttcatttgactttagcaaatagaca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| | |||    
T  12652070 tcattggttgggcctagataatgatatggggtcgtttgactttatcaatgagatattttttgtaacaaacttaccttcgtttgactttagcaaagacaca 12652169  T
Q  307 tccttagagggagtatcctctatctatgatttcaatcggaggaagttggagacaaaattggtggtattaaatgggtatgttgctttcatttgtactgtcc 406  Q
    ||||||        | ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12652170 tcctta--------accc----tctatgatttcaatcggaggaagttggagacaaaattggtggtattaaatgggtatgttgctttcatttgtactgtcc 12652257  T
Q  407 tcaagactgcttattttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacctgacgttatccg 506  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12652258 tcaagactgcttattttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacctttacctgacattatccg 12652357  T
Q  507 ccctatcgcggtaggaatcaagagtat 533  Q
    |||||||||||||||||| ||||||||    
T  12652358 ccctatcgcggtaggaattaagagtat 12652384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Original strand, 12646738 - 12647268
Alignment:
Q  7 gagacgaatagccctttctgggagatggacttggaatttgatgataatgatgatttttgggagggtgttccaatatatatgtatgaccctaattattagg 106  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||| || |||||| |||||||||| ||| |||||| ||    
T  12646738 gagaagaatagccctttctgggagatggacttggattttgacgatgatgatgatttttggaagggggtgccaataaatatgtatgatcctgattattggg 12646837  T
Q  107 agatatacagcctgagaagtaactcttagaggaaactcaacggtgatg---ta---atgccttcttcttgggaggagcgttgtcaagtgaacttgaatga 200  Q
    ||||||||||||| ||||||||||||| |||||||||  | |||| ||   ||   ||||||  ||||||||| ||||||||||| ||||||||||||||    
T  12646838 agatatacagcctcagaagtaactcttggaggaaacttgatggtggtgatatacctatgcctgattcttgggaagagcgttgtcaggtgaacttgaatga 12646937  T
Q  201 attttgtcattggttgggcctagataatgatatggggtcgtttgactttatcaattagatattttttgtaacaaacttatcttcatttgactttagcaaa 300  Q
    ||||||  ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  12646938 attttgctattggttgaacctagataatgatatggggtcgtttgactttatcaatgagatattttttgtaacaaacttaccttcatttgactttagcaaa 12647037  T
Q  301 tagacatccttagagggagtatcctctatctatgatttcaatcggaggaagttggagacaaaattggtggtattaaatgggtatgttgctttcatttgta 400  Q
     |||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  12647038 gagacatccttagagggagtatcatctatctatgatttcaatcgcagaaagttggagaaaaaattggtggtattaaatgggtctgttgctttcatttgta 12647137  T
Q  401 ctgtcctcaagactgcttattttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacctgacgt 500  Q
    ||||||||| |||| ||| |  ||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  12647138 ctgtcctcatgacttcttttagtcacatatgggttttgggtgaacatggtgttaaggaatcgtggactaaactttttgttgttggacctttacctgacat 12647237  T
Q  501 tatccgccctatcgcggtaggaatcaagagt 531  Q
    || ||| ||||||||||||||||| ||||||    
T  12647238 tacccgtcctatcgcggtaggaataaagagt 12647268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 6117901 - 6117965
Alignment:
Q  425 acatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacct 489  Q
    |||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  6117901 acatatggattttgggtgaacttggtgttaaagaatcgtggattaaactctttgttgttggacct 6117965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 13024835 - 13024766
Alignment:
Q  419 attttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    |||||||||| ||||||||||||||| | ||||| || ||||||||||||||| ||||||||||||||||    
T  13024835 attttcacatttgggttttgggtgaactcggtgtcaaagaatcgtggactaaattctttgttgttggacc 13024766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 12711845 - 12711784
Alignment:
Q  423 tcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttg 484  Q
    |||||||||| ||||||||||| | |||||||| |||||||||| |||||||||||||||||    
T  12711845 tcacatatggattttgggtgaactcggtgttaaagaatcgtggattaaactctttgttgttg 12711784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 12705780 - 12705839
Alignment:
Q  425 acatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttg 484  Q
    |||||||| ||||||||||| | |||||||| |||||||||| |||||||||||||||||    
T  12705780 acatatggattttgggtgaagtcggtgttaaagaatcgtggattaaactctttgttgttg 12705839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 488
Target Start/End: Complemental strand, 12709967 - 12709895
Alignment:
Q  416 cttattttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    ||||| || ||||| ||||||||||| ||||| |||| |||||||||||||||||| |||| ||| |||||||    
T  12709967 cttatgtttacatacgggttttgggttaaattagtgtcaaggaatcgtggactaaattcttcgttcttggacc 12709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 12712072 - 12711996
Alignment:
Q  187 gtgaacttgaatgaattttgtcattggttgggcctagataatgatatggggtcgtttgactttatcaattagatatt 263  Q
    |||||||||||||||||||| |||||||| |||| |  | ||||||| | ||| ||||||||||||||| |||||||    
T  12712072 gtgaacttgaatgaattttgccattggttaggcccatcttatgatattgtgtcatttgactttatcaatgagatatt 12711996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 12724898 - 12724976
Alignment:
Q  417 ttattttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    |||||| ||||||||| ||||||||||  ||| ||| || ||||| |||||||||||||||||| |||| ||| |||||    
T  12724898 ttatttgcacatatggattttgggtgagcttgctgtgaatgaatcatggactaaactctttgttcttggccctgtacct 12724976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 482
Target Start/End: Original strand, 18096701 - 18096764
Alignment:
Q  419 attttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgt 482  Q
    ||||||| || ||||||||||||||| | ||||| |||||||| ||||| || |||||||||||    
T  18096701 attttcatatttgggttttgggtgaagtgggtgtcaaggaatcatggaccaagctctttgttgt 18096764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 495
Target Start/End: Original strand, 26607096 - 26607143
Alignment:
Q  448 ggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    ||||| || ||||| |||| ||||||||||||||||||||||||||||    
T  26607096 ggtgtgaaagaatcatggattaaactctttgttgttggacctttacct 26607143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 12516901 - 12516863
Alignment:
Q  106 gagatatacagcctgagaagtaactcttagaggaaactc 144  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  12516901 gagatatacagccttagaagtaactcttggaggaaactc 12516863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 492
Target Start/End: Complemental strand, 27230342 - 27230284
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggaccttta 492  Q
    |||||||||| |||||||| |||||||| ||||||| |||||| | | |||||||||||    
T  27230342 ttttgggtgagattggtgtcaaggaatcatggactagactcttcgatattggaccttta 27230284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 37830624 - 37830714
Alignment:
Q  186 agtgaacttgaatgaattttgtcattggttgggcctagataatgatatggggtcgtttgactttatcaattagatatt-ttttgtaacaaa 275  Q
    |||||||||||||||||  || |||||||||| || | |  ||||||||| ||| |||||||||| |||| |||| || ||||||||||||    
T  37830624 agtgaacttgaatgaatggtgccattggttggaccaaaaatatgatatggtgtcatttgactttaacaatgagatgttcttttgtaacaaa 37830714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 6117660 - 6117736
Alignment:
Q  187 gtgaacttgaatgaattttgtcattggttgggcctagataatgatatggggtcgtttgactttatcaattagatatt 263  Q
    |||||||||||||||||||| |||  ||| |||| |  | ||||||| | ||| ||||||||||||||| |||||||    
T  6117660 gtgaacttgaatgaattttgccatatgttaggcccatctgatgatattgtgtcatttgactttatcaatgagatatt 6117736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 490
Target Start/End: Original strand, 27183909 - 27183965
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctt 490  Q
    ||||||||||||||||||| || ||||| |||| ||||||||| | | |||||||||    
T  27183909 ttttgggtgaaattggtgtcaaagaatcatggattaaactcttcgatattggacctt 27183965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 488
Target Start/End: Complemental strand, 44912585 - 44912518
Alignment:
Q  421 tttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    |||||||||| | ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacc 44912518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 13281097 - 13281154
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggaccttt 491  Q
    |||||||||||||||||||||| ||||| ||||||| |||||| | ||||||||||||    
T  13281097 ttttgggtgaaattggtgttaaagaatcatggactagactcttcgatgttggaccttt 13281154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 44918551 - 44918483
Alignment:
Q  420 ttttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    |||||||||||   |||| |||||| ||||||  || ||||||||||||||||||||||||||||||||    
T  44918551 ttttcacatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctttgttgttggacc 44918483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 44937862 - 44937794
Alignment:
Q  420 ttttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    |||||||||||   ||||||||||| | || || || ||||| ||||||||||||||||||||||||||    
T  44937862 ttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggacc 44937794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 44186102 - 44186181
Alignment:
Q  409 aagactgcttattttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    ||||| |||| |||||||||||  |||||||| ||| |||||||||  ||||| ||||||||||||||| |||| |||||    
T  44186102 aagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacc 44186181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 488
Target Start/End: Original strand, 9569202 - 9569271
Alignment:
Q  419 attttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacc 488  Q
    |||||||||||| | |||||||||||  |||  |||||||||||||||| ||||||||  ||||||||||    
T  9569202 attttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggacc 9569271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 482
Target Start/End: Original strand, 37875647 - 37875710
Alignment:
Q  419 attttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgt 482  Q
    ||||||| || ||||||||||||||| | ||| |||||||||| ||||| || |||||||||||    
T  37875647 attttcatatctgggttttgggtgaagtgggtattaaggaatcatggaccaatctctttgttgt 37875710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 488
Target Start/End: Original strand, 20426657 - 20426691
Alignment:
Q  454 aaggaatcgtggactaaactctttgttgttggacc 488  Q
    |||||||||||||| ||||||||||||||||||||    
T  20426657 aaggaatcgtggaccaaactctttgttgttggacc 20426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 4877805 - 4877862
Alignment:
Q  420 ttttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactcttt 477  Q
    |||||||||||  |||||||| ||| |||||||||  ||||| |||||||||||||||    
T  4877805 ttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactcttt 4877862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 1327266 - 1327322
Alignment:
Q  420 ttttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctt 476  Q
    |||||||||||  |||||||| ||| |||||||||  ||||| ||||||||||||||    
T  1327266 ttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactctt 1327322  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 33602 - 33541
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    ||||||||||| ||||||| ||||| || ||||||||||||||| || |||| |||||||||    
T  33602 ttttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttacct 33541  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 495
Target Start/End: Complemental strand, 17203 - 17145
Alignment:
Q  437 tgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    |||||||| | ||||| ||||| || |||||||||||||| ||| ||||||||||||||    
T  17203 tgggtgaactcggtgtgaaggagtcttggactaaactcttcgttattggacctttacct 17145  T

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Target: scaffold0129; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 10486 - 10542
Alignment:
Q  420 ttttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctt 476  Q
    |||||||||||   ||||||||||| ||||||| ||||| || ||||||||||||||    
T  10486 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 42414011 - 42414072
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    ||||||| ||| ||||||| ||||| || ||||||||||||||| |||||||||| ||||||    
T  42414011 ttttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttggacccttacct 42414072  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 491
Target Start/End: Original strand, 30651574 - 30651644
Alignment:
Q  421 tttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggaccttt 491  Q
    ||||||||||  ||||| |||||| ||||||| |  ||||| ||||||||||||||| || ||||||||||    
T  30651574 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggaccttt 30651644  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 491
Target Start/End: Original strand, 31777920 - 31777990
Alignment:
Q  421 tttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggaccttt 491  Q
    ||||||||||  ||||| |||||| ||||||| |  ||||| ||||||||||||||| || ||||||||||    
T  31777920 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggaccttt 31777990  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 42840564 - 42840503
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    ||||||||||| ||||||| || ||||| ||||||||| ||||| ||||||| || ||||||    
T  42840564 ttttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttacct 42840503  T

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Target: scaffold0831 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 1388 - 1313
Alignment:
Q  416 cttattttcacatatgggttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggaccttt 491  Q
    |||||||||||||||  ||||||||||||  ||| ||||  ||||||||||| ||||||||  ||||||| |||||    
T  1388 cttattttcacatatatgttttgggtgaacctggcgttagtgaatcgtggacaaaactcttcattgttggcccttt 1313  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 484
Target Start/End: Original strand, 2703738 - 2703788
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttg 484  Q
    ||||||||||| ||||||| |||||||| |||| ||||||||||| |||||    
T  2703738 ttttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttg 2703788  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 22535549 - 22535511
Alignment:
Q  105 ggagatatacagcctgagaagtaactcttagaggaaact 143  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22535549 ggagatatacagccttagaagtaactcttggaggaaact 22535511  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 495
Target Start/End: Original strand, 368825 - 368881
Alignment:
Q  439 ggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacct 495  Q
    |||||||||||||| |||||||| ||||  ||||||||  |||||||||| ||||||    
T  368825 ggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccattacct 368881  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 19219237 - 19219173
Alignment:
Q  434 ttttgggtgaaattggtgttaaggaatcgtggactaaactctttgttgttggacctttacctgac 498  Q
    ||||||||||| | ||||| |||||||| |||||||| ||||| | ||||||||| ||| |||||    
T  19219237 ttttgggtgaactcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgac 19219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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