View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18926_low_16 (Length: 518)
Name: NF18926_low_16
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_16 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0067 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 39 - 499
Target Start/End: Original strand, 39753 - 40217
Alignment:
| Q |
39 |
taaaatatattattgaagcatgtaatgttctgattcatatttaatgaagtagcctagtattttgattctgataatcataagctgaaagtaaaaagtatga |
138 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
39753 |
taaaacatattattgaagcatgtaatgttctgattcatatttaatgaagtagcctagtattttgattctgataaacataaactcaaagtaaaaagtatga |
39852 |
T |
|
| Q |
139 |
caattagaatcagaatacaccatagaaaacaaagaacttctccggtggtgacttataaaaacaacaaaagcagcacaacagtcatagttgatccttcaga |
238 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
39853 |
caatgagaatcaaaatacagcatagaaaacaaagaacttctccggtggcgacttccaaaaacaacaaaagcagcacaaca-tcatagttgatctttcaga |
39951 |
T |
|
| Q |
239 |
acttttttgtcca-----tctccattcccacacttctccagtgttgagtcattgtgattttactaatttgaaatccttgaggttgttggaacttggaatc |
333 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39952 |
acttttttgtccattccatctccattcccacacttctccaatggtgagtcatagtgattttactaatttgaaatccttgaggttgttggaacttggaatc |
40051 |
T |
|
| Q |
334 |
ctcaacactcactcccccatattgatcgttaatatcctttcactctgtcattgatctactaactagcagcagatcctcacaccgacgaggtcttctctga |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40052 |
ctcaacactcactcccccatattgatcgttaatatcctttcactctgtcattgatctactaactagcagcagatcctcacaccgacgaggtcttctctga |
40151 |
T |
|
| Q |
434 |
acttataactctagtaacggacgattgtgtccaataagcttatttccgatgctaaaatcagctgtg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40152 |
acttataactctagtaacggacgattgtgtccaataagcttatttccgatgctaaaatcagctgtg |
40217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 34454677 - 34454629
Alignment:
| Q |
177 |
tctccggtggtgacttataaaaacaacaaaagcagcacaacagtcatag |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||| || |||||| |
|
|
| T |
34454677 |
tctccggtggtgacttctaaaaacaacagaagcaacacagcaatcatag |
34454629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University