View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_17 (Length: 471)

Name: NF18926_low_17
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_17
NF18926_low_17
[»] chr2 (30 HSPs)
chr2 (1-471)||(39215039-39215509)
chr2 (318-471)||(39602105-39602258)
chr2 (314-471)||(39152012-39152169)
chr2 (318-456)||(39450628-39450766)
chr2 (312-457)||(39458337-39458482)
chr2 (318-471)||(39220276-39220429)
chr2 (326-458)||(39382026-39382158)
chr2 (320-471)||(39136395-39136546)
chr2 (314-471)||(39474078-39474235)
chr2 (314-471)||(39416170-39416327)
chr2 (326-458)||(39199295-39199427)
chr2 (1-121)||(39414906-39415026)
chr2 (347-471)||(39495377-39495501)
chr2 (314-471)||(39487992-39488148)
chr2 (3-151)||(39473577-39473725)
chr2 (18-138)||(39421973-39422093)
chr2 (347-471)||(39123636-39123760)
chr2 (36-121)||(39415025-39415110)
chr2 (314-471)||(39422290-39422447)
chr2 (318-395)||(44896171-44896248)
chr2 (1-120)||(39137598-39137717)
chr2 (1-72)||(39459058-39459129)
chr2 (326-414)||(39427504-39427592)
chr2 (216-267)||(39369737-39369788)
chr2 (66-120)||(39487723-39487777)
chr2 (5-72)||(39369914-39369981)
chr2 (5-115)||(39381639-39381749)
chr2 (53-95)||(44614681-44614723)
chr2 (220-325)||(39161458-39161563)
chr2 (220-325)||(39207631-39207736)
[»] chr7 (2 HSPs)
chr7 (320-439)||(19806788-19806907)
chr7 (5-130)||(19807538-19807663)
[»] chr5 (2 HSPs)
chr5 (312-424)||(17059002-17059114)
chr5 (23-100)||(33560771-33560848)
[»] chr8 (1 HSPs)
chr8 (62-111)||(44951213-44951262)
[»] scaffold0250 (1 HSPs)
scaffold0250 (62-119)||(4265-4322)
[»] chr4 (1 HSPs)
chr4 (38-82)||(33151510-33151554)


Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 39215509 - 39215039
Alignment:
Q  1 tgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215509 tgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttg 39215410  T
Q  101 ttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaacatcannnnnnnagatacaagttcattcatcaacatcttcagttggtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||    
T  39215409 ttcttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaacagcatttttttagatacaagttcattcatcaacatcttcagttggtct 39215310  T
Q  201 tcaaattccttctcctgtccttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcaccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215309 tcaaattccttctcctgtccttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcaccc 39215210  T
Q  301 gttttttatattgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215209 gttttttatattgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtc 39215110  T
Q  401 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39215109 catcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttct 39215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 39602258 - 39602105
Alignment:
Q  318 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcc 417  Q
    |||||||||||||| || ||||||||||||||||| ||||| || || ||||||||| |||||||||||||||||||||| ||||| |||||||| | ||    
T  39602258 tcttttgaaatgttgcccttgacttgattaagttccatctccttcgttttgagctctagcttgcgctctccaatcaagtcatccatgaaatagagttgcc 39602159  T
Q  418 cttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39602158 cttccttcactacaaaatccttaatacattcttcaatttttccctgcattttct 39602105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 314 - 471
Target Start/End: Complemental strand, 39152169 - 39152012
Alignment:
Q  314 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 413  Q
    ||||| ||||||||||||| |  |||||| |  |||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  39152169 cttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagc 39152070  T
Q  414 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    | |||||||||  ||||||||||||| | |||||| |||||||| || ||||||||||    
T  39152069 tgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttct 39152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 318 - 456
Target Start/End: Complemental strand, 39450766 - 39450628
Alignment:
Q  318 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcc 417  Q
    |||||||||||||| || |||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||||| ||    
T  39450766 tcttttgaaatgttccccttgacttgattaagttctatctctttcgccttgagctctagcttgcgctctccaatcaagttttccatcaaatagagctgcc 39450667  T
Q  418 cttccttcactacaaaatccttaatacattcttcaattt 456  Q
    ||||||| || ||||| | ||| ||||| || |||||||    
T  39450666 cttcctttaccacaaactgcttgatacaatcgtcaattt 39450628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 312 - 457
Target Start/End: Complemental strand, 39458482 - 39458337
Alignment:
Q  312 tgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaataga 411  Q
    ||||||| ||||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  39458482 tgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaatcaagtcttccatcaaataga 39458383  T
Q  412 gcttcccttccttcactacaaaatccttaatacattcttcaatttt 457  Q
    | |   |||||||  || |||||||||  | ||||| |||||||||    
T  39458382 gttgtgcttcctttgctgcaaaatcctcgacacatttttcaatttt 39458337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 318 - 471
Target Start/End: Complemental strand, 39220429 - 39220276
Alignment:
Q  318 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcc 417  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||  |||||| ||||  ||||||||  |||||||||||||||| |     
T  39220429 tcttttgaaatgttacccttgacttgatcaagttctatctcttttgccttgagctcaagcttgctctctttaatcaagttttccatcaaatagagctcct 39220330  T
Q  418 cttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |||| ||||||||||| ||||| ||||| || ||||||||| | |||| |||||    
T  39220329 cttctttcactacaaactccttgatacaatcgtcaattttttcctgcactttct 39220276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 326 - 458
Target Start/End: Original strand, 39382026 - 39382158
Alignment:
Q  326 aatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttc 425  Q
    ||||||| || |||||||||||||||| | |||||||| |||||||||| |||||||||||||||||| ||  ||||||||||||||||   ||||||||    
T  39382026 aatgttatcaatgacttgattaagttccacctcttttgccttgagctctagcttgcgctctccaatcatgttttccatcaaatagagctgatcttccttc 39382125  T
Q  426 actacaaaatccttaatacattcttcaattttt 458  Q
    |||||||| ||||| |||||||||||| |||||    
T  39382126 actacaaactccttgatacattcttcagttttt 39382158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 320 - 471
Target Start/End: Complemental strand, 39136546 - 39136395
Alignment:
Q  320 ttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttccct 419  Q
    ||||||||||||| |  ||||||||  |||||| | |||||||||||| || |||| |||| |||||||||||||||| |||||||||  ||||| ||||    
T  39136546 ttttgaaatgttatccatgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgccct 39136447  T
Q  420 tccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |||||  ||||||||||||| | |||||| ||||||||||| ||||||||||    
T  39136446 tcctttgctacaaaatccttgacacattcgtcaatttttccctgcattttct 39136395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 314 - 471
Target Start/End: Original strand, 39474078 - 39474235
Alignment:
Q  314 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 413  Q
    ||||| ||||||||||||| |  ||||||||  |||||| || |||||||| ||||| |||||||||||||||  |||||| || |||| ||||||||||    
T  39474078 cttctgttttgaaatgttatccatgacttgacaaagttccatatcttttgtgttgagttcttgcttgcgctcttgaatcaattcctccaccaaatagagc 39474177  T
Q  414 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |  || |||||  ||||||||||||| | |||||||||||||||||| ||||||||||    
T  39474178 tgtccatcctttgctacaaaatccttgacacattcttcaatttttccctgcattttct 39474235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 471
Target Start/End: Original strand, 39416170 - 39416327
Alignment:
Q  314 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 413  Q
    ||||| ||||||||||||| |  ||| ||||  |||||| | ||||||||||||||| |||||||||||||| | |||||| || |||| ||||||||||    
T  39416170 cttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagc 39416269  T
Q  414 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |  ||||||||  ||||||||||||| | |||||||||| ||||| | ||||||||||    
T  39416270 tgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttct 39416327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 458
Target Start/End: Original strand, 39199295 - 39199427
Alignment:
Q  326 aatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttc 425  Q
    ||||||| || |||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||  |||| |||| |||| | ||||| |||     
T  39199295 aatgttatcaatgacttgattaagttctatctctttcatcttgagctctagcttgcgttctccaatcaagttttccaacaaaaagagttgccctttcttt 39199394  T
Q  426 actacaaaatccttaatacattcttcaattttt 458  Q
    |||||||| || || ||||| || |||||||||    
T  39199395 actacaaactcattgatacaatcatcaattttt 39199427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 39414906 - 39415026
Alignment:
Q  1 tgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttg 100  Q
    |||| ||||||||  | |||||||| |||||||| |||||||||| ||||| |||||||||||| |||||| ||| |||||| |||||||||||| ||||    
T  39414906 tgagttccttaacttgacctttgaactcctcctcctttgattcaaactccttcacttgacctttgaattccccctcttttgagtggaactccttcatttg 39415005  T
Q  101 ttcttcgaattgcttttcttt 121  Q
    ||||  ||||| |||||||||    
T  39415006 ttctctgaatttcttttcttt 39415026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 471
Target Start/End: Original strand, 39495377 - 39495501
Alignment:
Q  347 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 446  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||   ||| |||  || |||||||||| |  |||    
T  39495377 aagttctgtttcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgctgcaaaatccttgacgcat 39495476  T
Q  447 tcttcaatttttccttgcattttct 471  Q
    |||||||||||| | ||||||||||    
T  39495477 tcttcaattttttcctgcattttct 39495501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 314 - 471
Target Start/End: Original strand, 39487992 - 39488148
Alignment:
Q  314 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 413  Q
    ||||| ||||||||||||| |  |||||| |  ||||||  |||||||||| | ||| ||||||||| || ||||||||||||| ||||||||||| |||    
T  39487992 cttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttcttgcttgtgc-ctccaatcaagtcctccatcaaatatagc 39488090  T
Q  414 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |  ||||||||  |||||||||| || | ||||||||||||||| || ||||||||||    
T  39488091 tgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttct 39488148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 39473577 - 39473725
Alignment:
Q  3 agctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgtt 102  Q
    |||||||||||||| ||||||||||||||||  || | || || ||||| ||||||||  ||||||||||||| |||||||||||||||||||  ||||     
T  39473577 agctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtc 39473676  T
Q  103 cttcgaattgcttttctttggtttcgagattcttcaattgtctctcgaa 151  Q
    | |  |||| ||||||||| | |||||| | ||||| ||| ||||||||    
T  39473677 cattaaatttcttttcttttgattcgagctccttcagttggctctcgaa 39473725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 39421973 - 39422093
Alignment:
Q  18 cctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgctttt 117  Q
    |||||||||| |||||| ||||||| || ||||| || || ||| ||||||||||||| ||||||| ||||||||||| ||||| | ||||||| |||||    
T  39421973 cctttgaattgctcctcctttgatttaaactccttcaatttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttctttt 39422072  T
Q  118 ctttggtttcgagattcttca 138  Q
    || | | |||||||| |||||    
T  39422073 ctattgattcgagatccttca 39422093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 471
Target Start/End: Complemental strand, 39123760 - 39123636
Alignment:
Q  347 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 446  Q
    ||||||| | ||||||||||| || |||| ||||||||||||||||| ||||||||||||| |||| |   ||| ||| || | ||||||||| | | ||    
T  39123760 aagttctgtttcttttgtcttcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgctttacaagaaaatccttgacaaat 39123661  T
Q  447 tcttcaatttttccttgcattttct 471  Q
    |||||| ||||||| ||||||||||    
T  39123660 tcttcagtttttccctgcattttct 39123636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 39415025 - 39415110
Alignment:
Q  36 tttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttcttt 121  Q
    |||||||||| ||||| |||||| ||||| | |||||||| ||||||||||||||| ||| || |||||| |||||| ||||||||    
T  39415025 tttgattcaaactccttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttt 39415110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 471
Target Start/End: Original strand, 39422290 - 39422447
Alignment:
Q  314 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 413  Q
    ||||| ||||||||||| | |  |||||| |  |||||| | || |||||| ||||| |||||||||||||||||||||||||  ||||||||| |||||    
T  39422290 cttctgttttgaaatgtcatccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagc 39422389  T
Q  414 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 471  Q
    |    ||||||  |||| || ||||  | ||||||||||||||| || ||||||||||    
T  39422390 tgtgattcctttgctacgaattcctcgacacattcttcaattttcccctgcattttct 39422447  T

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Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 44896171 - 44896248
Alignment:
Q  318 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaag 395  Q
    ||||| ||||||||||| || |||||||||||||||||||||||   |  |||||||| |||||||||||||||||||    
T  44896171 tctttagaaatgttaccctttacttgattaagttctatctctttcaccgcgagctctttcttgcgctctccaatcaag 44896248  T

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Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 39137717 - 39137598
Alignment:
Q  1 tgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttg 100  Q
    |||||||||||||  |  ||| ||| ||||| || ||||||||||  |||| ||| ||  |||| |||||||| | ||||||||||||||||||| ||||    
T  39137717 tgagctccttaacttgatcttcgaactcctcatcctttgattcaaaatccttcacgtgtactttgaattcctcttcttttgactggaactccttcatttg 39137618  T
Q  101 ttcttcgaattgcttttctt 120  Q
    ||||||  ||||||||||||    
T  39137617 ttcttcatattgcttttctt 39137598  T

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Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39459129 - 39459058
Alignment:
Q  1 tgagctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcct 72  Q
    |||||| ||||||| | |||||||||||||||| ||||||||||| ||||| | ||||||||||||| ||||    
T  39459129 tgagctgcttaacctgacctttgaattcctccttatttgattcaaactccttcccttgacctttaaactcct 39459058  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 414
Target Start/End: Original strand, 39427504 - 39427592
Alignment:
Q  326 aatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagct 414  Q
    ||||||| | |||||||||  ||||||| | ||||||||  |||| || ||||||||||||||||||||||| | ||||||| ||||||    
T  39427504 aatgttatccttgacttgacgaagttctgtttcttttgttctgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagct 39427592  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 39369788 - 39369737
Alignment:
Q  216 tgtccttcaagctgtttctctcttgactccaaatcctttactcgtccttcaa 267  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||||||||    
T  39369788 tgtccttcaagcagcttctctcttgattccaactcctttactcgtccttcaa 39369737  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 39487723 - 39487777
Alignment:
Q  66 aattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttctt 120  Q
    |||||||||| ||||||||||||||||||| ||||||||||   |||||||||||    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttctt 39487777  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 39369981 - 39369914
Alignment:
Q  5 ctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcct 72  Q
    ||||||||| || ||||  ||||||||||| |||||||||||| ||| |||| |||||||||| ||||    
T  39369981 ctccttaactcgaccttcaaattcctcctcctttgattcaagcaccttcactcgacctttaaactcct 39369914  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 39381639 - 39381749
Alignment:
Q  5 ctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttct 104  Q
    |||||||||  | ||||||| ||||||||  ||||||| ||  |||| |||||  |||| ||||||||||| |||| | || ||||||||| ||||| |     
T  39381639 ctccttaacttgacctttgagttcctccttctttgatttaatttccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtccc 39381738  T
Q  105 tcgaattgctt 115  Q
    |||||||||||    
T  39381739 tcgaattgctt 39381749  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 44614723 - 44614681
Alignment:
Q  53 cacttgacctttaaattcctcctgttttgactggaactccttc 95  Q
    |||| |||||||||||||||||| || ||||||||||||||||    
T  44614723 cactcgacctttaaattcctcctcttctgactggaactccttc 44614681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 325
Target Start/End: Complemental strand, 39161563 - 39161458
Alignment:
Q  220 cttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcacccgttttttatattgcttctc 319  Q
    |||||||||| ||||||||||||||||  ||| |||| ||| | |||| ||| |||||   ||||| |||||||| ||| |||  || ||| ||||||||    
T  39161563 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39161464  T
Q  320 ttttga 325  Q
    ||||||    
T  39161463 ttttga 39161458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 325
Target Start/End: Original strand, 39207631 - 39207736
Alignment:
Q  220 cttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcacccgttttttatattgcttctc 319  Q
    |||||||||| ||||||||||||||||  ||| |||| ||| | |||| ||| |||||   ||||| |||||||| ||| |||  || ||| ||||||||    
T  39207631 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39207730  T
Q  320 ttttga 325  Q
    ||||||    
T  39207731 ttttga 39207736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 439
Target Start/End: Complemental strand, 19806907 - 19806788
Alignment:
Q  320 ttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttccct 419  Q
    ||||||||||||| |  ||||||||| |||||| | |||||||||||| || |||| ||||||||||||||||||||| |||||||||  ||||| ||||    
T  19806907 ttttgaaatgttatccatgacttgatgaagttccaactcttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgccct 19806808  T
Q  420 tccttcactacaaaatcctt 439  Q
    |||||  |||||||||||||    
T  19806807 tcctttgctacaaaatcctt 19806788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 19807663 - 19807538
Alignment:
Q  5 ctccttaacccggcctttgaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttgttct 104  Q
    ||||||||| || |||| |||  |||| || ||||||||||  |||| ||| ||  |||| |||||||| | ||||||||||||||||||| ||||||||    
T  19807663 ctccttaactcgaccttcgaacccctcatcctttgattcaaaatccttcacgtgtgctttgaattcctcttcttttgactggaactccttcatttgttct 19807564  T
Q  105 tcgaattgcttttctttggtttcgag 130  Q
    ||  ||||||||||||  ||||||||    
T  19807563 tcatattgcttttcttgtgtttcgag 19807538  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 17059114 - 17059002
Alignment:
Q  312 tgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaataga 411  Q
    ||||||| ||||||||||||| |  ||||||||  ||||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||| | | |||    
T  17059114 tgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatcaagtcctccatgagagaga 17059015  T
Q  412 gcttcccttcctt 424  Q
    | |||||||||||    
T  17059014 gtttcccttcctt 17059002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 33560848 - 33560771
Alignment:
Q  23 gaattcctcctcatttgattcaagctcctccacttgacctttaaattcctcctgttttgactggaactccttcttttg 100  Q
    |||||||||||| ||||||| || ||||| |||||| ||||| |||| ||||| |||||||| || ||||||| ||||    
T  33560848 gaattcctcctcttttgattgaaactccttcacttgtcctttgaatttctcctcttttgactcgagctccttcatttg 33560771  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 44951213 - 44951262
Alignment:
Q  62 tttaaattcctcctgttttgactggaactccttcttttgttcttcgaatt 111  Q
    |||||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  44951213 tttaaattcctcctcttttgactgaaactccttctcttgttctttgaatt 44951262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 4322 - 4265
Alignment:
Q  62 tttaaattcctcctgttttgactggaactccttcttttgttcttcgaattgcttttct 119  Q
    |||||||||||||| ||||||||| |||||||||| |||| ||| ||||  |||||||    
T  4322 tttaaattcctcctcttttgactgaaactccttctcttgtcctttgaatatcttttct 4265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 33151554 - 33151510
Alignment:
Q  38 tgattcaagctcctccacttgacctttaaattcctcctgttttga 82  Q
    ||||||||| |||| ||||||||||||||||||||| | ||||||    
T  33151554 tgattcaagatccttcacttgacctttaaattcctcttcttttga 33151510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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