View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_19 (Length: 451)
Name: NF18926_low_19
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 30900391 - 30900844
Alignment:
| Q |
1 |
cactatattttttatttgtggatgaggtcaacatgttggttgctatactctttatactggacaagagaaagtgattgaaagnnnnnnnnctttaacactt |
100 |
Q |
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| T |
30900391 |
cactatattttttaattgtggatgaggtcaacatgttggttgctatactctttatactggacaagagaaagtgattgaaagttttttttctttaacactt |
30900490 |
T |
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| Q |
101 |
tgattaaaaggtatgaagtacttattaaatgacaactatacggtattgctagacaaactgcgaccaccaaggcttaaacaattcaaatctataaagtccc |
200 |
Q |
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| T |
30900491 |
tgattaaaaggtatgaagtacttattaaatgacaactatacggtattgctagacaaactgcgaccaccaaggcttaaacaattcaaatctataaagtccc |
30900590 |
T |
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| Q |
201 |
tctttcatgtgttctaagctagtgtcactatcttttgtttcactcgttgttggatattcttcatctttttcatgtcttttaaatttgtttggatgctttt |
300 |
Q |
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| T |
30900591 |
tctttcatgtgttctaagctagtgtcactatcttttgtttcactcgttgttggatattcttcatc-ttttcatgtcttttaaatttgtttggatgctttt |
30900689 |
T |
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| Q |
301 |
aagcttcgattacctgtacttatagaggacaattattattctcatgacaagattatccaccagcaaatgttgatcatttgtctaatccgtcgatcttatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
30900690 |
aagcttcgattacctgtacttatagaggacaattattattctcatgacaagattatccaccagcaaatgttgatcatttgtctaatccatcaatcttatt |
30900789 |
T |
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| Q |
401 |
gcaacataactaa----tgattgccaattacatttttcacaaaatcaccaccatt |
451 |
Q |
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| T |
30900790 |
gcaacataactaatgattgattgccaattacatttttcacaaaatcaccaccatt |
30900844 |
T |
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