View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_2 (Length: 832)
Name: NF18926_low_2
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_2 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 195 - 511
Target Start/End: Complemental strand, 126073 - 125757
Alignment:
| Q |
195 |
atctcctataatataagaagagaatacctgcttcctccaggtatgacatctggcttcctgtatgtgtgacaattggctgcggctttgtttgacaagtgga |
294 |
Q |
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| T |
126073 |
atctcctataatataagaagagaatacctgcttcctccaggcatgacatttggtttcctatatgtgtgacaattggctgcggctttgtttgacaagtgga |
125974 |
T |
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| Q |
295 |
cagctccattaagtgacacgtgagcatttgagttaaagagagggttccaaaggagaaaaggcttcaacttccgtaagggagggaaagcagggaaatccaa |
394 |
Q |
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| T |
125973 |
cagctccattaagtgacacgtgagcatttgagttaaagagagggttccaaaggagaaaaggcttcaacttccgtaagggagggaaagcatggaaatccaa |
125874 |
T |
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| Q |
395 |
caaaagattttgaaaaggtgttttgaataaagcatatgtcacttcagttgtacttacacttgctgagaaagagaaactctcttttcaaatcttctccttg |
494 |
Q |
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| T |
125873 |
caaaagattttgaaaaggtgttttgaataaagcatatgtcacttcagttgtacttacacttgctgagaaagagaaactctcttttcaaatcttctccttg |
125774 |
T |
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| Q |
495 |
caaactcagttctacca |
511 |
Q |
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| T |
125773 |
caaactcagttctacca |
125757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 625 - 703
Target Start/End: Complemental strand, 125644 - 125566
Alignment:
| Q |
625 |
cctttgttgttattttgcaggtgatactcaactgttcatcttcctggtaataatttcaaaacgtttatattgaatattc |
703 |
Q |
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| T |
125644 |
cctttgttgttattttgcaggtgatactcaactgttcatcttcctggtaataatttcaaaacgtttatattgaatattc |
125566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 15053119 - 15052933
Alignment:
| Q |
12 |
atgaatgaatttgctggcatttaattcttttatttttgttgaattaattaatagagtaagaagaaatgcatcaaggagaagcttgacttatcaac--taa |
109 |
Q |
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| T |
15053119 |
atgaatgaatttgctggcatttaactcttttatttttgatgaattaattaatagagtaagaagaaatgcatcaaggagaagcttgacttatcaactataa |
15053020 |
T |
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| Q |
110 |
acttataaatttaaagaaatgaattatttccgaaattgcagaaaatacacttatgttgcctctcatttggcgcttctttttgttcat |
196 |
Q |
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| T |
15053019 |
acttataaatttaaagaaataaattgtttcagaaattgtagaaaatacacttatgttgcctctcatttggcgcttctttttgttcat |
15052933 |
T |
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