View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_22 (Length: 436)
Name: NF18926_low_22
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 162 - 427
Target Start/End: Complemental strand, 4795937 - 4795672
Alignment:
| Q |
162 |
agaaaacaaatgaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
261 |
Q |
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| T |
4795937 |
agaaaacaaataaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
4795838 |
T |
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| Q |
262 |
aatatattcaattaaatatctgcacaatcttataaactagcaagagttcgatattagctccaacagtacaatgaaaggatcattaatttctttggttgta |
361 |
Q |
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| T |
4795837 |
actatattcaattaaacatctgcacaatcttataaactagcaagagttcgatatttgctccaacagtacaatgaaaggatcattaatttctttggttgta |
4795738 |
T |
|
| Q |
362 |
acagcattaatggtaactttattttttcaacctcatcaacatatctcagcagcatcacagaataat |
427 |
Q |
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| T |
4795737 |
acagcattaatggtaactttattttttcaacctcatcaacatagctcagcagcatcacagaataat |
4795672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 39634824 - 39634940
Alignment:
| Q |
24 |
ggtgtcaaattcaattttaaaaatagctatccaaacaccaa-ttttttagtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgca |
122 |
Q |
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| T |
39634824 |
ggtgtcaaactcaattttaaaaatggctacccaaacaccaatttttttagcagattcacttttaggatggttaaactcacgtttgcagttccccaccgca |
39634923 |
T |
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| Q |
123 |
caaccaaacaagtactt |
139 |
Q |
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| T |
39634924 |
taaccaaacgagtactt |
39634940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 37887433 - 37887471
Alignment:
| Q |
32 |
attcaattttaaaaatagctatccaaacaccaatttttt |
70 |
Q |
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| T |
37887433 |
attcaattttaaaaatagttatccaaacaccaatttttt |
37887471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 4679830 - 4679793
Alignment:
| Q |
386 |
tttcaacctcatcaacatatctcagcagcatcacagaa |
423 |
Q |
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| T |
4679830 |
tttcaaccacatcaacatatctcagcagcaccacagaa |
4679793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 2484585 - 2484698
Alignment:
| Q |
27 |
gtcaaattcaattttaaaaatagctatccaaacaccaatttttt-agtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgcacaa |
125 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||||| | |||||||| || |
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| T |
2484585 |
gtcaaactcaattttaaaaatagctacccaaacaccaatttttttagcagattcacttttaggatggctagactcacgtttgcagttctccaccgcataa |
2484684 |
T |
|
| Q |
126 |
ccaaacaagtactt |
139 |
Q |
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| T |
2484685 |
ccaaacgagtactt |
2484698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 3748268 - 3748304
Alignment:
| Q |
34 |
tcaattttaaaaatagctatccaaacaccaatttttt |
70 |
Q |
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| T |
3748268 |
tcaattttaaaaatagttacccaaacaccaatttttt |
3748304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 3619751 - 3619848
Alignment:
| Q |
34 |
tcaattttaaaaatagctatccaaacaccaattttttagtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaac |
131 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| | ||||||||| ||| || | |||||||| ||||| |||||| | ||||||||| |
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| T |
3619751 |
tcaattttaaaaatggctacccaaacaccaattttttagcaaactcacttttaagatatttaaactcacgtttacagctccccaccacgcaaccaaac |
3619848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 37699085 - 37699122
Alignment:
| Q |
34 |
tcaattttaaaaatagctatccaaacaccaatttttta |
71 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
37699085 |
tcaattttaaaaatagttatccaaacaccaatttttta |
37699122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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