View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_27 (Length: 414)

Name: NF18926_low_27
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_27
NF18926_low_27
[»] chr4 (4 HSPs)
chr4 (31-298)||(8902017-8902283)
chr4 (317-398)||(8901629-8901710)
chr4 (195-303)||(8915550-8915658)
chr4 (167-212)||(8915674-8915719)
[»] chr5 (2 HSPs)
chr5 (128-303)||(20074676-20074849)
chr5 (257-301)||(31222909-31222953)
[»] chr7 (3 HSPs)
chr7 (167-239)||(24788996-24789068)
chr7 (128-158)||(2649299-2649329)
chr7 (1-57)||(43288180-43288236)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 31 - 298
Target Start/End: Complemental strand, 8902283 - 8902017
Alignment:
Q  31 tcacaattaagatagaatttccaacactaaacatatactattttcgactagtacttaaatactaactagcaaaatacgcgttcattcgcattgttggaaa 130  Q
    |||||||||||||  ||||||||||||| || |||||||||||| || |||||||||||||||||| |||||| || |||||||||| ||||||| |||     
T  8902283 tcacaattaagatgtaatttccaacacttaagatatactattttagaatagtacttaaatactaaccagcaaa-taagcgttcattcacattgttagaat 8902185  T
Q  131 tatataataaagttttagaaacttgttatnnnnnnnttattaagaaataaatgaagttattttgcactttcatatagaacttactaaatcaataaacctt 230  Q
    ||||||||||||||||||||||| |||||       |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  8902184 tatataataaagttttagaaactggttataaaaaaattattaagacgtaaatgaagttattttgcactttcatatagaacttactaaatcaataaacacg 8902085  T
Q  231 tttattaaatatgttgtttcgtgtacatttttataataaattaatattattctcagtttatttataag 298  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8902084 gttattaaatatattgtttcgtgtacatttttataataaattaatattattctcagtttatttataag 8902017  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 8901710 - 8901629
Alignment:
Q  317 ggataattaaaataagaataagattttgttcaataaatatagagagtttagatatggtttagttattttaccaaaattatgc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  8901710 ggataattaaaataagaataagattttgttcaataaatatagagactttagatatagtttagttattttaccagaattatgc 8901629  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 8915658 - 8915550
Alignment:
Q  195 cactttcatatagaacttactaaatcaataaacctttttattaaatatgttgtttcgtgtacatttttataataaattaatattattctcagtttattta 294  Q
    |||||||||||| ||||||||||  ||||  |  ||||| ||||| ||  ||| ||||| |  |||||||||||||||| ||||||||||| ||||||||    
T  8915658 cactttcatataaaacttactaacacaatccatgtttttgttaaagatactgtctcgtgcatgtttttataataaattactattattctcattttattta 8915559  T
Q  295 taagatagc 303  Q
     || |||||    
T  8915558 aaatatagc 8915550  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 8915719 - 8915674
Alignment:
Q  167 ttattaagaaataaatgaagttattttgcactttcatatagaactt 212  Q
    |||||| ||||||||||||| |||||| |||||||||||| |||||    
T  8915719 ttattatgaaataaatgaagctatttttcactttcatataaaactt 8915674  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 20074849 - 20074676
Alignment:
Q  128 aaatatataataaagttttagaaacttgttatnnnnnnnttattaagaaataaatgaagttattttgcactttcatatagaacttactaaatcaataaac 227  Q
    ||||||||||||||||||||||||||||||||       ||| ||| ||||||||||||  |||||||||||||||||| |||||| || |||||||||     
T  20074849 aaatatataataaagttttagaaacttgttatgaaata-ttaataataaataaatgaagccattttgcactttcatataaaacttattatatcaataaat 20074751  T
Q  228 ctttttattaaatatgttgtttcgtgtacatttttataataaattaatattattctcagtttatttataagatagc 303  Q
      |||||||||| || |||| | |||||  |||||||||||||||| ||||||||||| ||| |||| ||||||||    
T  20074750 aattttattaaagatattgtcttgtgtatgtttttataataaattactattattctca-tttttttaaaagatagc 20074676  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 31222953 - 31222909
Alignment:
Q  257 atttttataataaattaatattattctcagtttatttataagata 301  Q
    |||||||||||||||||  |||||||||| |||||||| ||||||    
T  31222953 atttttataataaattataattattctcattttatttaaaagata 31222909  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 24789068 - 24788996
Alignment:
Q  167 ttattaagaaataaatgaagttattttgcactttcatatagaacttactaaatcaataaacctttttattaaa 239  Q
    ||||||| | ||||||||||||||| | || ||||||||| || ||| ||||| ||||||| |||||||||||    
T  24789068 ttattaaaatataaatgaagttattgtacattttcatataaaaattattaaattaataaacatttttattaaa 24788996  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 2649329 - 2649299
Alignment:
Q  128 aaatatataataaagttttagaaacttgtta 158  Q
    |||||||||||||||||||||||||||||||    
T  2649329 aaatatataataaagttttagaaacttgtta 2649299  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43288236 - 43288180
Alignment:
Q  1 aaatgtcgcaattaggcgactagggacaaatcacaattaagatagaatttccaacac 57  Q
    ||||||| ||||||||||||||||| || ||| |||| ||| | |||||||||||||    
T  43288236 aaatgtcacaattaggcgactaggggcagatcgcaataaaggtggaatttccaacac 43288180  T

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