View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_29 (Length: 411)
Name: NF18926_low_29
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 34109896 - 34110281
Alignment:
| Q |
7 |
aagaaaataacaaaaaaggcctggattaaaagttaaacaaacaaggaaatcgagtagcaaatagatgttcagcacaatttcgaattcatattctggacta |
106 |
Q |
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| T |
34109896 |
aagaaaataacaaaaaaggcctggattaaaagttaaacaaacaaggaaatcgagtagcaaatagatgttcagcacaatttcatattcatattctggacta |
34109995 |
T |
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| Q |
107 |
aacaaatgaatccattcagaatagtctgtaggatcactaattcccatttaagtagggaactttaatggtcattttggatgcatcagaacgaagagtaggg |
206 |
Q |
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| T |
34109996 |
aacaaatgaatccattcagaatagccagtaggatcactaattcccatttaagtagggaactttaatggtcattttggatgcatcagaacgaagagtaggg |
34110095 |
T |
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| Q |
207 |
cttgccctggatgaacttctggctgattccagagctcgggaggtttgaagggccatctcagcatggagttgtaaacacgtcatagccatctacagtgaaa |
306 |
Q |
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| T |
34110096 |
cttgccctggatgaa---ctggctgattccagagctcgggaggtttgaagagccatctcagcatggagttgtaaacacgtcatagccatctacagtgaaa |
34110192 |
T |
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| Q |
307 |
cnnnnnnnnntgtaaaatatttatccatcctatcatgatatacatttaagttgctatagctatatttgtaactttgccacaattgaata |
395 |
Q |
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| T |
34110193 |
caaaaaaaaatgtaaaatatttatccatcctatcatgatatacatttaagttgctatagctatatttgtaactttgccacaattgaata |
34110281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 39298347 - 39298275
Alignment:
| Q |
57 |
cgagtagcaaatagatgttcagcacaatttcgaattcatattctggactaaacaaatgaatccattcagaata |
129 |
Q |
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| T |
39298347 |
cgagtaggaaatagatgttcagcacaattttaaattcatattcatggctaaataaatgagaccattctgaata |
39298275 |
T |
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