View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_3 (Length: 676)
Name: NF18926_low_3
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 8e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 406 - 660
Target Start/End: Complemental strand, 16102810 - 16102556
Alignment:
| Q |
406 |
gacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcagaaccaaacatactctaacggaaagtg |
505 |
Q |
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| T |
16102810 |
gacctacttaaccatattaaacacaaaatttactatctttgaaacaatttcaagaatggaaccaactattgcagaaccaaaattactctagcggagagtg |
16102711 |
T |
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| Q |
506 |
gattatatatatgatccatgatctaatctacgactctgcatagtgtccaatagtttatctactggatccatccttttgtgatattactatttgttgt-cc |
604 |
Q |
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| T |
16102710 |
gattatatatatgatccatgatctaatctacgactctgcatagtgcctaataatctatctattagatccat-cttttgtgatattgatctttagtgtccc |
16102612 |
T |
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| Q |
605 |
taatgaccatatataacttgaccatcacgctaagaaaaatctatatataatcattc |
660 |
Q |
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| T |
16102611 |
aaatgaccaaatataacttcaccatcatgctaagaataatcaatgtataatcattc |
16102556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 407 - 523
Target Start/End: Complemental strand, 14656080 - 14655964
Alignment:
| Q |
407 |
acctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcagaaccaaacatactctaacggaaagtgg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||| |
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| T |
14656080 |
acctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagagtggaaccaaatattgcagaaccaaaaatactctaacagaaagtgg |
14655981 |
T |
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| Q |
507 |
attatatatatgatcca |
523 |
Q |
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| T |
14655980 |
attatatatatgatcca |
14655964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 479
Target Start/End: Complemental strand, 27004736 - 27004663
Alignment:
| Q |
406 |
gacctacttgaccatattaaaagcacaatttactatctttgaaacaatttccagactggaaccaactattgcag |
479 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
27004736 |
gacctacttgaccatattaaacgcacaatttactatctttgaaacaatttcaaaagtggaaccaactattgcag |
27004663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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