View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_31 (Length: 407)

Name: NF18926_low_31
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_31
NF18926_low_31
[»] chr7 (9 HSPs)
chr7 (146-373)||(31940836-31941070)
chr7 (378-407)||(7845117-7845146)
chr7 (378-407)||(26945734-26945763)
chr7 (378-407)||(31365266-31365295)
chr7 (378-407)||(38837749-38837778)
chr7 (378-407)||(41065989-41066018)
chr7 (378-407)||(43742244-43742273)
chr7 (378-407)||(44426593-44426622)
chr7 (378-407)||(46004555-46004584)
[»] chr2 (6 HSPs)
chr2 (375-407)||(22596524-22596556)
chr2 (376-407)||(31711503-31711534)
chr2 (376-407)||(31783786-31783817)
chr2 (377-407)||(37867148-37867178)
chr2 (378-407)||(24183617-24183646)
chr2 (376-404)||(34726819-34726847)
[»] chr4 (7 HSPs)
chr4 (376-407)||(21995663-21995694)
chr4 (372-405)||(9813167-9813200)
chr4 (378-407)||(17109938-17109967)
chr4 (374-407)||(31763128-31763161)
chr4 (378-407)||(36924236-36924265)
chr4 (378-407)||(43374442-43374471)
chr4 (378-406)||(562770-562798)
[»] chr3 (7 HSPs)
chr3 (376-407)||(30794825-30794856)
chr3 (376-407)||(36185925-36185956)
chr3 (377-407)||(50416584-50416614)
chr3 (378-407)||(12974210-12974239)
chr3 (378-407)||(27068527-27068556)
chr3 (376-405)||(49053448-49053477)
chr3 (375-407)||(12974004-12974036)
[»] chr8 (5 HSPs)
chr8 (377-407)||(23567480-23567510)
chr8 (376-405)||(8439210-8439239)
chr8 (336-369)||(10210404-10210437)
chr8 (378-407)||(17656613-17656642)
chr8 (378-407)||(17792912-17792941)
[»] chr6 (4 HSPs)
chr6 (377-407)||(10588973-10589003)
chr6 (377-407)||(25119490-25119520)
chr6 (378-407)||(19284366-19284395)
chr6 (378-407)||(21385009-21385038)
[»] chr5 (6 HSPs)
chr5 (377-407)||(3340584-3340614)
chr5 (373-407)||(15559039-15559073)
chr5 (377-407)||(20696347-20696377)
chr5 (378-407)||(20134419-20134448)
chr5 (378-407)||(39861800-39861829)
chr5 (378-406)||(16552242-16552270)
[»] scaffold0129 (1 HSPs)
scaffold0129 (378-407)||(20140-20169)
[»] scaffold0102 (1 HSPs)
scaffold0102 (378-407)||(33611-33640)
[»] chr1 (7 HSPs)
chr1 (378-407)||(9041071-9041100)
chr1 (378-407)||(12796418-12796447)
chr1 (378-407)||(17893293-17893322)
chr1 (378-407)||(31763770-31763799)
chr1 (378-407)||(33156987-33157016)
chr1 (378-407)||(49992513-49992542)
chr1 (375-407)||(1395371-1395403)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 146 - 373
Target Start/End: Complemental strand, 31941070 - 31940836
Alignment:
Q  146 gcatattttgcattctaaagcatgtgtggaaggcttattaaaaacaaaagcatatgtggaagataaaattaaaccaaaatttaataattttgaaaagaca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941070 gcatattttgcattctaaagcatgtgtggaaggcttattaaaaacaaaagcatatgtggaagataaaattaaaccaaaatttaataattttgaaaagaca 31940971  T
Q  246 tcacctttgaatttgtgttaagagaaaatggccg---gcaaaactgacatgtatacctttgataaatgatgt----tgtctattatatggatcacatata 338  Q
    ||||||||||||| |||||||||||||||||  |   ||||||||||| |||||||||||||||||||||||    |||||||||||| ||||||||| |    
T  31940970 tcacctttgaattcgtgttaagagaaaatggttgacagcaaaactgacgtgtatacctttgataaatgatgtatgttgtctattatattgatcacataca 31940871  T
Q  339 tcatttataaaatgaatcttaaaaatgaactttat 373  Q
    |||||||||||||||| ||||||||||||||||||    
T  31940870 tcatttataaaatgaaccttaaaaatgaactttat 31940836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 7845146 - 7845117
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  7845146 gggtgcggttatggtgcataaggaaatcct 7845117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 26945763 - 26945734
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  26945763 gggtgcggttatggtgcataaggaaatcct 26945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 31365266 - 31365295
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  31365266 gggtgcggttatggtgcataaggaaatcct 31365295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 38837778 - 38837749
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  38837778 gggtgcggttatggtgcataaggaaatcct 38837749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 41066018 - 41065989
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  41066018 gggtgcggttatggtgcataaggaaatcct 41065989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 43742244 - 43742273
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  43742244 gggtgcggttatggtgcataaggaaatcct 43742273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 44426593 - 44426622
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  44426593 gggtgcggttatggtgcataaggaaatcct 44426622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 46004584 - 46004555
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  46004584 gggtgcggttatggtgcataaggaaatcct 46004555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 22596556 - 22596524
Alignment:
Q  375 tatgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||||    
T  22596556 tatgggtgcggttatggtgcataaggaaatcct 22596524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 31711503 - 31711534
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||||    
T  31711503 atgggtgcggttatggtgcataaggaaatcct 31711534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 31783786 - 31783817
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||||    
T  31783786 atgggtgcggttatggtgcataaggaaatcct 31783817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 37867148 - 37867178
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  37867148 tgggtgcggttatggtgcataaggaaatcct 37867178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 24183646 - 24183617
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  24183646 gggtgcggttatggtgcataaggaaatcct 24183617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 34726847 - 34726819
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaat 404  Q
    |||||||||||||||||||||||||||||    
T  34726847 atgggtgcggttatggtgcataaggaaat 34726819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 21995663 - 21995694
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||||    
T  21995663 atgggtgcggttatggtgcataaggaaatcct 21995694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 9813200 - 9813167
Alignment:
Q  372 atctatgggtgcggttatggtgcataaggaaatc 405  Q
    ||||| ||||||||||||||||||||||||||||    
T  9813200 atctaagggtgcggttatggtgcataaggaaatc 9813167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 17109967 - 17109938
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  17109967 gggtgcggttatggtgcataaggaaatcct 17109938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 31763161 - 31763128
Alignment:
Q  374 ctatgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||| ||||||||||||||||||||||||||||    
T  31763161 ctatgagtgcggttatggtgcataaggaaatcct 31763128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 36924236 - 36924265
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  36924236 gggtgcggttatggtgcataaggaaatcct 36924265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 43374442 - 43374471
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  43374442 gggtgcggttatggtgcataaggaaatcct 43374471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 562770 - 562798
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcc 406  Q
    |||||||||||||||||||||||||||||    
T  562770 gggtgcggttatggtgcataaggaaatcc 562798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 30794825 - 30794856
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||||    
T  30794825 atgggtgcggttatggtgcataaggaaatcct 30794856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 36185956 - 36185925
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||||    
T  36185956 atgggtgcggttatggtgcataaggaaatcct 36185925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 50416614 - 50416584
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  50416614 tgggtgcggttatggtgcataaggaaatcct 50416584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 12974239 - 12974210
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  12974239 gggtgcggttatggtgcataaggaaatcct 12974210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 27068527 - 27068556
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  27068527 gggtgcggttatggtgcataaggaaatcct 27068556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 49053477 - 49053448
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatc 405  Q
    ||||||||||||||||||||||||||||||    
T  49053477 atgggtgcggttatggtgcataaggaaatc 49053448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 12974004 - 12974036
Alignment:
Q  375 tatgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||| ||||||||||||||||||||||||||    
T  12974004 tatgggcgcggttatggtgcataaggaaatcct 12974036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 23567480 - 23567510
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  23567480 tgggtgcggttatggtgcataaggaaatcct 23567510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 8439239 - 8439210
Alignment:
Q  376 atgggtgcggttatggtgcataaggaaatc 405  Q
    ||||||||||||||||||||||||||||||    
T  8439239 atgggtgcggttatggtgcataaggaaatc 8439210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 10210404 - 10210437
Alignment:
Q  336 atatcatttataaaatgaatcttaaaaatgaact 369  Q
    |||||||||||||||||||||| |||||||||||    
T  10210404 atatcatttataaaatgaatctaaaaaatgaact 10210437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 17656613 - 17656642
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  17656613 gggtgcggttatggtgcataaggaaatcct 17656642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 17792941 - 17792912
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  17792941 gggtgcggttatggtgcataaggaaatcct 17792912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 10589003 - 10588973
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  10589003 tgggtgcggttatggtgcataaggaaatcct 10588973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 25119520 - 25119490
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  25119520 tgggtgcggttatggtgcataaggaaatcct 25119490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 19284366 - 19284395
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  19284366 gggtgcggttatggtgcataaggaaatcct 19284395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 21385038 - 21385009
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  21385038 gggtgcggttatggtgcataaggaaatcct 21385009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 3340584 - 3340614
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  3340584 tgggtgcggttatggtgcataaggaaatcct 3340614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 15559039 - 15559073
Alignment:
Q  373 tctatgggtgcggttatggtgcataaggaaatcct 407  Q
    |||| ||||||||||||||||||||||||||||||    
T  15559039 tctaagggtgcggttatggtgcataaggaaatcct 15559073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Complemental strand, 20696377 - 20696347
Alignment:
Q  377 tgggtgcggttatggtgcataaggaaatcct 407  Q
    |||||||||||||||||||||||||||||||    
T  20696377 tgggtgcggttatggtgcataaggaaatcct 20696347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 20134448 - 20134419
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  20134448 gggtgcggttatggtgcataaggaaatcct 20134419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 39861829 - 39861800
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  39861829 gggtgcggttatggtgcataaggaaatcct 39861800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 16552242 - 16552270
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcc 406  Q
    |||||||||||||||||||||||||||||    
T  16552242 gggtgcggttatggtgcataaggaaatcc 16552270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 20169 - 20140
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  20169 gggtgcggttatggtgcataaggaaatcct 20140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 33611 - 33640
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  33611 gggtgcggttatggtgcataaggaaatcct 33640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 9041100 - 9041071
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  9041100 gggtgcggttatggtgcataaggaaatcct 9041071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 12796418 - 12796447
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  12796418 gggtgcggttatggtgcataaggaaatcct 12796447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 17893322 - 17893293
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  17893322 gggtgcggttatggtgcataaggaaatcct 17893293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 31763770 - 31763799
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  31763770 gggtgcggttatggtgcataaggaaatcct 31763799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 33156987 - 33157016
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  33156987 gggtgcggttatggtgcataaggaaatcct 33157016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 49992513 - 49992542
Alignment:
Q  378 gggtgcggttatggtgcataaggaaatcct 407  Q
    ||||||||||||||||||||||||||||||    
T  49992513 gggtgcggttatggtgcataaggaaatcct 49992542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 1395403 - 1395371
Alignment:
Q  375 tatgggtgcggttatggtgcataaggaaatcct 407  Q
    ||||| |||||||||||||||||||||||||||    
T  1395403 tatggttgcggttatggtgcataaggaaatcct 1395371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University