View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_32 (Length: 406)

Name: NF18926_low_32
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_32
NF18926_low_32
[»] chr2 (3 HSPs)
chr2 (12-396)||(39288683-39289067)
chr2 (12-210)||(39295752-39295950)
chr2 (253-382)||(39295592-39295724)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 39289067 - 39288683
Alignment:
Q  12 agaatagtcctttgtaaactgtgaaaccttgatccagcagaataatagacaaccttgtcttcctttttggtggttctgtttttggtagtaccttaacttt 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39289067 agaatagtcctttgtaaactgtgaaaccttgatctagcagaataatagacaaccttgacttcctttttggtggttctgtttttggtagtaccttaacttt 39288968  T
Q  112 ttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttgctcgactc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39288967 ttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttgctcgactc 39288868  T
Q  212 cgagttggactaataccttgactctgaggaagaattttgaaagaattgtttcttgtccgaggaatccaaagccatgttccagttctctctggctttgttg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39288867 cgagttggactaataccttgactctgaggaagaattttgaaagaattgtttcttgtccgaggaatccaaagccatgttccagttctctctggctttgttg 39288768  T
Q  312 gtgattcaattgcaaaagggcttcttctgttaggattgatctcgaatgcaacaccgcggcaacttgaaaaccttgctatcttcat 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39288767 gtgattcaattgcaaaagggcttcttctgttaggattgatctcgaatgcaacaccgcggcaacttgaaaaccttgctatcttcat 39288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 39295950 - 39295752
Alignment:
Q  12 agaatagtcctttgtaaactgtgaaaccttgatccagcagaataatagacaaccttgtcttcctttttggtggttctgtttttggtagtaccttaacttt 111  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||| |||||||| |  ||  || |||||   || |  ||||||||||||| ||||||    
T  39295950 agaacagtcctttgtacactgtgcaaccttgatccagcagaataatcgacaacctcgaattttttgttggtatgtcagactttggtagtacctcaacttt 39295851  T
Q  112 ttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttgctcgact 210  Q
     |||||||||||||| ||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||| ||||||||    
T  39295850 ctcttggttattttccatgtcctgaacttgagctagaaattcatactcatcatcgtcagcatcaatgttgatgtcacagaagtgactactagctcgact 39295752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 253 - 382
Target Start/End: Complemental strand, 39295724 - 39295592
Alignment:
Q  253 agaattgtttcttgtcc---gaggaatccaaagccatgttccagttctctctggctttgttggtgattcaattgcaaaagggcttcttctgttaggattg 349  Q
    |||||||||||||||||   |||||||||||||||||||||| | | |||||| |||||||| ||||||||||||||||||||| ||| |||||||||||    
T  39295724 agaattgtttcttgtccatggaggaatccaaagccatgttcctgctttctctgtctttgttgttgattcaattgcaaaagggctgcttttgttaggattg 39295625  T
Q  350 atctcgaatgcaacaccgcggcaacttgaaaac 382  Q
    |||||||| | ||||||||||||||||||||||    
T  39295624 atctcgaaggaaacaccgcggcaacttgaaaac 39295592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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