View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_38 (Length: 336)
Name: NF18926_low_38
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 12909712 - 12909411
Alignment:
| Q |
16 |
caccatgaatatgttttctgttagtaagtttattcaataaaactattaacaagagagtcatttgcggatttgtttgtaatttcaatacattcagttccta |
115 |
Q |
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| T |
12909712 |
caccatgaatatgttttctgttagtaagtttattcaataaaactattaagaacagagtcatttggggatttgtttgtaatttcaatacattcagttccta |
12909613 |
T |
|
| Q |
116 |
taggaaaatgaaagcctctcacacagttaggtacaaaatgtcactattacagaaaaagtagtccaggaaacataccaatctattatcaccttcaacatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12909612 |
taggaaaatgaaagcctctcacacagttaggtacaaaatgtcactattacagaaaaagtagtccaggaaacataccaatctattatcaccttcaacatga |
12909513 |
T |
|
| Q |
216 |
tatggcgataatttgacagtgaaactaggactctcattgggatgagaatttgtgcaacttctctcatttagtttttgtgcatttttagctttcttaccca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12909512 |
tatggcgataatttgacagtgaaactaggactctcattgggatgagaatttgtgcaacttctctcatttagtttttgtgcatttttagcttttttaccca |
12909413 |
T |
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| Q |
316 |
tg |
317 |
Q |
| |
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|| |
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| T |
12909412 |
tg |
12909411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 21115661 - 21115561
Alignment:
| Q |
180 |
aggaaacataccaatctattatcaccttcaacatgatatggcgataatttgacagtgaaactaggactctcattgggatgagaatttgtgcaacttctct |
279 |
Q |
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||||||||||||||||||| |||| ||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21115661 |
aggaaacataccaatctat---caccctcaacataatatcgcgataatttgagagtgaaactaggattctcattgggatgagaatttgtgcaacttctct |
21115565 |
T |
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| Q |
280 |
catt |
283 |
Q |
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|||| |
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| T |
21115564 |
catt |
21115561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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