View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_39 (Length: 333)

Name: NF18926_low_39
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_39
NF18926_low_39
[»] chr5 (1 HSPs)
chr5 (3-318)||(31610042-31610359)
[»] chr2 (6 HSPs)
chr2 (3-318)||(9446973-9447274)
chr2 (144-318)||(31320254-31320430)
chr2 (3-64)||(31320517-31320579)
chr2 (253-315)||(14555896-14555960)
chr2 (155-200)||(38346612-38346657)
chr2 (255-318)||(21949895-21949960)
[»] chr1 (4 HSPs)
chr1 (115-318)||(18438600-18438790)
chr1 (115-318)||(18449458-18449648)
chr1 (115-318)||(18454551-18454741)
chr1 (250-318)||(42080684-42080754)
[»] chr7 (3 HSPs)
chr7 (164-314)||(30559269-30559421)
chr7 (255-318)||(49094543-49094608)
chr7 (261-318)||(38836146-38836205)
[»] chr4 (2 HSPs)
chr4 (250-318)||(39735820-39735890)
chr4 (261-318)||(2048991-2049050)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 318
Target Start/End: Complemental strand, 31610359 - 31610042
Alignment:
Q  3 gaacacacctgccaatggaggtacaaagaccacatccatcaatggctaccactaagactagcaatacaacactagctatgacactaaacatgaaccgcta 102  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  31610359 gaacacacctgccaatggaggtacaaagaccacatctatcaatggctaccactaagactagctatacaacgctagctatgacactaaacatgaactgcta 31610260  T
Q  103 agcnnnnnnngcaaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagt 202  Q
    |||         ||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  31610259 agcaaaaaagcaaaccaatccagcagcagaactagtagtaaaaaagaatacaatcgatcacactaagatagattcagcaaccatctaaaatatcagaagt 31610160  T
Q  203 tgaacccaaataagaacaacaactgcaagatttggaactttcaacaagacagtcacatatatttggggttgcttttgatcaca--ctttttggaatgcgt 300  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||| ||| ||||    
T  31610159 tgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatatatttgggattgcttttgatcacaccctttttagaacgcgt 31610060  T
Q  301 ttgtatgtgctcactact 318  Q
    ||||||||||||||||||    
T  31610059 ttgtatgtgctcactact 31610042  T

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Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 318
Target Start/End: Complemental strand, 9447274 - 9446973
Alignment:
Q  3 gaacacacctgccaatggaggtacaaagaccacatccatcaatggctaccactaagactagcaatacaacactagctatgacactaaacatgaaccgcta 102  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||             ||||||||| ||||| |||||||| ||||||| ||||    
T  9447274 gaacacacctgccaatggaggtacaaagaccaaatccatcaatggctacct------------atacaacacaagctaagacactaa-catgaactgcta 9447188  T
Q  103 agcnnnnnnngcaaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccac-taagatagattcagcaaccatctaaaataacagaag 201  Q
    |||         |||||||| ||||| ||||||||||||||||| || |||||| |||||| | ||||||||||||||| |||||| |||||||||||||    
T  9447187 agcaaagca---aaccagtccagcagtagaactagtagtaaaaa-gagtacaatatatcccccctaagatagattcagccaccatccaaaataacagaag 9447092  T
Q  202 ttgaacccaaataagaacaacaactgcaagatttggaactttcaacaagacagtcacatatatttggggttgcttttgatcaca--ctttttggaatgcg 299  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||    
T  9447091 ttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatatttgggattgcttttgatcacaccctttttggaacgcg 9446992  T
Q  300 tttgtatgtgctcactact 318  Q
    ||||| |||||||||||||    
T  9446991 tttgtgtgtgctcactact 9446973  T

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Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 31320430 - 31320254
Alignment:
Q  144 aaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaataagaacaacaactgcaagatttggaacttt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  31320430 aaaagaatacaatctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaacttt 31320331  T
Q  244 caacaagacagtcacatatatttggggttgcttttgatcaca--ctttttggaatgcgtttgtatgtgctcactact 318  Q
    |||||||||| ||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  31320330 caacaagacaatcacatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactact 31320254  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 31320579 - 31320517
Alignment:
Q  3 gaacacacctgccaatggaggtacaaagaccacatccatcaatggctaccac-taagactagc 64  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  31320579 gaacaccccttccaatggaggtacaaagaccacatccaacaatggctaccacgtaagactagc 31320517  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 14555960 - 14555896
Alignment:
Q  253 agtcacatatatttggggttgcttttgatcaca--ctttttggaatgcgtttgtatgtgctcact 315  Q
    ||||||||||||||||| |||||||||||||||  |||||||||| | |||||||| || |||||    
T  14555960 agtcacatatatttgggattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 38346612 - 38346657
Alignment:
Q  155 atctatcccactaagatagattcagcaaccatctaaaataacagaa 200  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  38346612 atctatcccaccaagatagattcagcaaccaaccaaaataacagaa 38346657  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 21949895 - 21949960
Alignment:
Q  255 tcacatatatttggggttgcttttgatcacac--tttttggaatgcgtttgtatgtgctcactact 318  Q
    ||||| ||||||||| ||||||||||| ||||  ||||| ||| | ||||||||||||||||||||    
T  21949895 tcacaaatatttgggattgcttttgattacaccctttttagaacgagtttgtatgtgctcactact 21949960  T

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Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 115 - 318
Target Start/End: Complemental strand, 18438790 - 18438600
Alignment:
Q  115 aaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 214  Q
    ||||| || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18438790 aaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaata 18438692  T
Q  215 agaacaacaactgcaagatttggaactttcaacaagacagtcacatatatttggggttgcttttgatcaca--ctttttggaatgcgtttgtatgtgctc 312  Q
    ||||   |||||||||||| |||||||||||||||||||||||           | |||||||||||||||  |||||||||| || |||||||||||||    
T  18438691 agaa---caactgcaagatatggaactttcaacaagacagtca-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctc 18438606  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 115 - 318
Target Start/End: Complemental strand, 18449648 - 18449458
Alignment:
Q  115 aaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 214  Q
    ||||| || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18449648 aaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaata 18449550  T
Q  215 agaacaacaactgcaagatttggaactttcaacaagacagtcacatatatttggggttgcttttgatcaca--ctttttggaatgcgtttgtatgtgctc 312  Q
    ||||   |||||||||||| |||||||||||||||||||||||           | |||||||||||||||  |||||||||| || |||||||||||||    
T  18449549 agaa---caactgcaagatatggaactttcaacaagacagtca-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctc 18449464  T

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Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 115 - 318
Target Start/End: Complemental strand, 18454741 - 18454551
Alignment:
Q  115 aaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 214  Q
    ||||| || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18454741 aaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaata 18454643  T
Q  215 agaacaacaactgcaagatttggaactttcaacaagacagtcacatatatttggggttgcttttgatcaca--ctttttggaatgcgtttgtatgtgctc 312  Q
    ||||   |||||||||||| |||||||||||||||||||||||           | |||||||||||||||  |||||||||| || |||||||||||||    
T  18454642 agaa---caactgcaagatatggaactttcaacaagacagtca-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctc 18454557  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 42080684 - 42080754
Alignment:
Q  250 gacagtcacatatatttggggttgcttttgat--cacactttttggaatgcgtttgtatgtgctcactact 318  Q
    |||||||| | ||||||||| |||||||||||  ||| |||||||||| | ||||| ||||||||||||||    
T  42080684 gacagtcaaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 30559269 - 30559421
Alignment:
Q  164 actaagatagattcagcaaccatctaaaataacagaagttgaacccaaataagaacaacaactgcaagatttggaactttcaacaagacagtcacatata 263  Q
    |||||||||||||||||||||| | |||||||||||||  ||| ||||||| ||||| ||||||||  ||   ||||| |||||| ||| |||||| ||     
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgcagaatacagaactgtcaacatgaccgtcacaaatc 30559368  T
Q  264 tttggggttgcttttgat--cacactttttggaatgcgtttgtatgtgctcac 314  Q
    |||||| |||||||||||  ||| ||||||||||   |||| |||||||||||    
T  30559369 tttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcac 30559421  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 49094543 - 49094608
Alignment:
Q  255 tcacatatatttggggttgcttttgatcacac--tttttggaatgcgtttgtatgtgctcactact 318  Q
    ||||| ||||||||| ||||||||||| ||||  ||||||||| | ||||||||||||||||||||    
T  49094543 tcacaaatatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 38836205 - 38836146
Alignment:
Q  261 atatttggggttgcttttgatcacac--tttttggaatgcgtttgtatgtgctcactact 318  Q
    ||||||||| ||||||||||| ||||  ||||||||| | |||||||| |||||||||||    
T  38836205 atatttgggattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 39735890 - 39735820
Alignment:
Q  250 gacagtcacatatatttggggttgcttttgat--cacactttttggaatgcgtttgtatgtgctcactact 318  Q
    ||||||||||||||||| || |||||||||||  ||| ||| |||||| | ||||||||||||||||||||    
T  39735890 gacagtcacatatattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 2049050 - 2048991
Alignment:
Q  261 atatttggggttgcttttgatcacac--tttttggaatgcgtttgtatgtgctcactact 318  Q
    ||||||||| ||||||||||| ||||  ||||||||| | |||||||| |||||||||||    
T  2049050 atatttgggattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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