View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_4 (Length: 652)
Name: NF18926_low_4
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 15 - 634
Target Start/End: Original strand, 35498618 - 35499237
Alignment:
| Q |
15 |
ttatatcaaatatagattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35498618 |
ttatatcaaatatagattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatca |
35498717 |
T |
|
| Q |
115 |
ccctcaagaaccttagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgt |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35498718 |
ccctcaagaaccttagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgt |
35498817 |
T |
|
| Q |
215 |
ttatatgacaaacaactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatatta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35498818 |
ttatatgacaaacaactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatatta |
35498917 |
T |
|
| Q |
315 |
cgaaagaggtgctcttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaattccacatagtcaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35498918 |
cgaaagaggtgctcttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaactccacatagtcaa |
35499017 |
T |
|
| Q |
415 |
tctagtcagaaacaacgaaacaatcaaaacctctaacaggtgatatcatgcatgacagccagtatttaatatatgatagtcagtaaacagaactcaaatt |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35499018 |
tctagtcagaaacaacgaaacaatcaaaacctctaacaggtgatatcatgcatgacaaccagtatttaatatatgatggtcagtaaacagaactcaaatt |
35499117 |
T |
|
| Q |
515 |
tcacctcttcatgagtaataagagtgggaggtttaggtagaaagaagaagctcttctcaaggggatacaaaattccatcttcagctttcagagatgattt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35499118 |
tcacctcttcatgagtaataagagtgggaggtttaggtagaaagaagaagctcttctcaaggggatacaaaattccatcttcagctttcagagatgattt |
35499217 |
T |
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| Q |
615 |
cactgcataaccatcttgac |
634 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35499218 |
cactgcataaccatcttgac |
35499237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 420
Target Start/End: Complemental strand, 7072971 - 7072581
Alignment:
| Q |
28 |
agattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatcaccctcaagaacct |
127 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||| |||| |
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| T |
7072971 |
agattaggcacctcctcgtcactttcatctccaccagcttcatttctgatgcgctcgagatgtggatcgacggcatcatcatcatcattctcaagcacct |
7072872 |
T |
|
| Q |
128 |
tagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgtttatatgacaaac |
227 |
Q |
| |
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| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | | ||| ||| || | | |||||| |
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| T |
7072871 |
tggccacaccaacagttggttgggcatcagctaaattcataattttcaagcccttagaactgcatgtgcaggacaaaagtgaattgcttgtgtaacaaac |
7072772 |
T |
|
| Q |
228 |
aactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatattacgaaagaggtgct |
327 |
Q |
| |
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|| || || | |||| ||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||| |
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| T |
7072771 |
aaatatgtgtga--taaattttggcagtgagttaatatttacctgataaaaccatacaaattgtggtattcatttctctgaatatttcggaagagatgct |
7072674 |
T |
|
| Q |
328 |
cttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaattccacatagtcaatctagt |
420 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7072673 |
cttgctcagatttgagtctgataagaaggtcaaagtaatgcatgtttgaaccaccagcagcatgtcgctcaaattccacatagtcaatctagt |
7072581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 512 - 634
Target Start/End: Complemental strand, 7072478 - 7072356
Alignment:
| Q |
512 |
atttcacctcttcatgagtaataagagtgggaggtttaggtagaaagaagaagctcttctcaaggggatacaaaattccatcttcagctttcagagatga |
611 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
7072478 |
attttacctcttcatgaagaataagagtgggaggtttaggcagaaagaagaagctcttctcaagtggatacagaattccatcttcagctttcaaagatga |
7072379 |
T |
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| Q |
612 |
tttcactgcataaccatcttgac |
634 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7072378 |
cttcactgcataaccatcttgac |
7072356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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