View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_42 (Length: 312)
Name: NF18926_low_42
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 86 - 291
Target Start/End: Original strand, 390033 - 390238
Alignment:
| Q |
86 |
tttcaggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacac |
185 |
Q |
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| T |
390033 |
tttcaggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcttatggaagaaagaaggccacac |
390132 |
T |
|
| Q |
186 |
ttttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgt |
285 |
Q |
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| T |
390133 |
tcttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttctcgttggtttgggtgt |
390232 |
T |
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| Q |
286 |
tggcat |
291 |
Q |
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|||||| |
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| T |
390233 |
tggcat |
390238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 52769076 - 52768909
Alignment:
| Q |
89 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
188 |
Q |
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| T |
52769076 |
caggaaacaattgtcagcatggcagtggctggtgcaattgttggagcagcagtaggtggttggatgaatgatcgttatggaagaaagaaggcaaccatca |
52768977 |
T |
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| Q |
189 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcata |
256 |
Q |
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| T |
52768976 |
ttgcagatgttatctttattctcggagcaattgtcatggctgctgcgccagatccttatattctcata |
52768909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 52772015 - 52771811
Alignment:
| Q |
89 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
188 |
Q |
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||||||||||| || ||||||||||| ||||||||||| ||||| || ||| | ||||||||| |||| || || || ||| |||||||||| || || |
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| T |
52772015 |
caggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaataggtggttggattaacgatgcttacggacgaaagaaggcaactctca |
52771916 |
T |
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| Q |
189 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
288 |
Q |
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| T |
52771915 |
tcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgccttcttgttggtttaggtgtcgg |
52771816 |
T |
|
| Q |
289 |
cattg |
293 |
Q |
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||||| |
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| T |
52771815 |
cattg |
52771811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 276
Target Start/End: Complemental strand, 38014037 - 38013850
Alignment:
| Q |
89 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
188 |
Q |
| |
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|||||||| ||||| ||||||||| | | |||||||||| |||| || ||| ||||| ||| ||||||| || | |||| | |||||||| |||||| |
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| T |
38014037 |
caggaaactattgtaagcatggcattggttggtgcaattattggagcagcaacaggtggctggattaatgatgcttttggacgtaagaaggcaacactta |
38013938 |
T |
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| Q |
189 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttgg |
276 |
Q |
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||||||||| |||||| ||| ||| || || | |||||| | || || ||| | |||||||||||| || |||||||||||||| |
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| T |
38013937 |
gtgctgatgttgtctttactcttggatcagttgttatggcttccgcgccagatgcatatgttctcatacttggccgtcttcttgttgg |
38013850 |
T |
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