View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_46 (Length: 280)

Name: NF18926_low_46
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_46
NF18926_low_46
[»] chr7 (9 HSPs)
chr7 (18-280)||(39567399-39567661)
chr7 (18-280)||(39360754-39361016)
chr7 (18-280)||(39346203-39346465)
chr7 (18-280)||(39334945-39335207)
chr7 (18-280)||(39550606-39550868)
chr7 (18-280)||(39541348-39541610)
chr7 (18-280)||(39577206-39577468)
chr7 (18-172)||(39591791-39591945)
chr7 (21-280)||(39624168-39624427)
[»] chr4 (3 HSPs)
chr4 (18-280)||(2874223-2874485)
chr4 (18-256)||(2884217-2884455)
chr4 (18-256)||(2900509-2900747)
[»] chr3 (1 HSPs)
chr3 (18-280)||(49770245-49770507)
[»] chr2 (2 HSPs)
chr2 (18-256)||(44213206-44213444)
chr2 (24-256)||(44236181-44236413)
[»] chr8 (1 HSPs)
chr8 (120-196)||(28941049-28941125)
[»] chr1 (1 HSPs)
chr1 (18-58)||(2163906-2163946)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 39567661 - 39567399
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567661 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 39567562  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567561 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 39567462  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567461 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 39567399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 39360754 - 39361016
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||   | ||||||||||    
T  39360754 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaatatgttcacattctcaaaggaaccgtggtgatctcactcc 39360853  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  39360854 tgcagcctccaccagagacttacaatctttttgacgacattatactactctctgatagtcacattatttaccaaggtccccgggaacacgtgcttgaatt 39360953  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    ||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  39360954 tttcgaatcaattggttttaaatgtccaaataggaaaggagtggcagattttttgcaagaagt 39361016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 39346203 - 39346465
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||  | ||||||||||    
T  39346203 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaagcaatatgtccacattctcaaaggaaccgcggtgatctcactcc 39346302  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    ||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  39346303 tgcagccgccaccagaaacttacaatctattcgacgacattattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatt 39346402  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    |||  ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  39346403 tttcaaatcaattggttttaaatgtccaaataggaaaggagtggcagattttttgcaagaagt 39346465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 39334945 - 39335207
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||  | ||||||||||    
T  39334945 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaagcaatatgtccacattctcaaaggaaccgcggtgatctcactcc 39335044  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    ||||||| |||||||| ||||||||||| ||||||  | |||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||    
T  39335045 tgcagccgccaccagaaacttacaatctatttgacagcattattctactctctgatagtcatattatataccaaggtcctcgggaacacgtgcttgaatt 39335144  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    ||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  39335145 tttcgaatcaattggttttaaatgtccaaataggaaaggagtggcggattttttgcaagaagt 39335207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 39550868 - 39550606
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||  | ||||| ||||    
T  39550868 gaaatatctactggtttggatagctcgacaacttttcagattgtgaattcaatgaagcaatttgtccacattctcaaaggaactgcggtcatctcgctcc 39550769  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  39550768 ttcagccaccaccagagacttacaatctttttgacgacattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatt 39550669  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39550668 tttcgaatcaattggttttaaatgtcctgataggaaaggagtggcagattttttgcaagaagt 39550606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 39541610 - 39541348
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  |||| ||||||||||| ||||| ||  | ||||||||||    
T  39541610 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaataaagcagtatgtacacattctcaaaggaacggctgtcatctcactcc 39541511  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | ||||||||||||||||| | |||||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  39541510 ttcagccaccaccagagacattcaatctttttgatgaaattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatt 39541411  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39541410 tttcgaatcaatcggttttaaatgtcctgataggaaaggagtggcagattttttgcaagaagt 39541348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 39577468 - 39577206
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||  |||||||| | ||||||||||| ||  | |||||||||     
T  39577468 gaaatatctactggtttggatagctcaacaacttttcaagttgtgaaatcaatgaagcagtatgtccacctgctcaatggaactgctgtgatctcactct 39577369  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||  | | |||| | ||||| |||||  | |||||||| ||||||||    
T  39577368 tgcagccaccaccagagacttatgatctttttgacgacattattctactctctgaggggcacattgtgtaccagggtccttgtgaacacgtgcttgaatt 39577269  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    |||||  ||| | ||||| || ||||| || || |||  ||||||||| || || ||||||||    
T  39577268 ttttgcttcattaggtttcaagtgtcctgaaagaaaatcagtggcagactttttacaagaagt 39577206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 39591945 - 39591791
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||  ||| ||| |||  |||||||  ||||||| ||||| ||  | |||||||||     
T  39591945 gaaatatctactggtttggatagctcgacaacttttcaagttgtgagatcagtgatgcattatgtccatcttctcaaaggaactgctgtaatctcactct 39591846  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctga 172  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||    
T  39591845 tgcagccaccacctgagacttactatcttttcgacgacattattctactctctga 39591791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 39624427 - 39624168
Alignment:
Q  21 atatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcctgc 120  Q
    ||||||| ||||||||||  ||||||| | |||||||||||||| ||  |||  |||  |||| || |||||||  |||| ||  | |||||||| |  |    
T  39624427 atatctattggtttggatgactcaacagcctttcaaattgtgaaatcgctgaaacaatttgtctaccttctcaaaagaactgctgtgatctcactacaac 39624328  T
Q  121 agccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttt 220  Q
    ||||| ||| ||||||||||||||||||||| ||| ||||| ||||||| ||| | | |||| | |||||||||||  | | ||| || ||||| |||||    
T  39624327 agccatcactagagacttacaatctttttgatgacattattttactctccgatggacacattgtgtaccaaggtccttgtgtacaagtgcttgatttttt 39624228  T
Q  221 tgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    ||  ||||| |||||||  ||||| || ||||||  ||||| ||| || || ||||||||    
T  39624227 tgcttcaataggttttatgtgtcctgagaggaaaccagtggtagactttttacaagaagt 39624168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 2874223 - 2874485
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||| ||||| || ||||| || ||| |||||||||||||||| ||  | |||||| ||||  | |||||  ||||||| ||  |||||||| | |    
T  2874223 gaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtttatattcttcatggaactgcacttatctcattgc 2874322  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | |||||| |||||||||||||  | |||||||| ||| |||||||  | |||||| ||   ||| | |||||||| || || ||| | || ||||||||    
T  2874323 ttcagccagcaccagagacttatgaactttttgatgacattattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgttcttgaatt 2874422  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
    ||||||||| || ||||| |||||||| || |||||||| || || |||||| | ||||||||    
T  2874423 ttttgaatctattggtttcaaatgtcctgagaggaaaggcgttgctgatttccttcaagaagt 2874485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 2884217 - 2884455
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||||||||||||||| || || |||||||| ||||||||||  ||  |   |||| |||| |||||||| ||||||||| |  |||||||  | |    
T  2884217 gaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacattcttaatggaaccacagttatctctttac 2884316  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | || ||| |||| ||||||||  | |||||||| ||| |||||||  | |||||| |||  ||| | |||||||| || || |||||  | ||||||||    
T  2884317 tccaaccagcacctgagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaatt 2884416  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaagg 256  Q
    |||||||||| | ||||| |||||||| || ||||||||    
T  2884417 ttttgaatcagttggtttcaaatgtcctgagaggaaagg 2884455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 2900747 - 2900509
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||||||||| ||||| || || |||||||| ||||||||||| ||  | |||||| |||| || ||||| |||||||| ||  |||||||  | |    
T  2900747 gaaatatctactggcttggacagttccacaactttccaaattgtgaaatctcttaggcaatatgttcatattcttaatggaactgcagttatctctttgc 2900648  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | || ||| |||||||||||||  | |||||||| ||| |||||||  | || ||| |||  ||| | || ||||| || || ||||| || ||||| ||    
T  2900647 ttcaaccagcaccagagacttatgaactttttgatgacattattcttatatccgatggtcaaattgtctatcaaggaccgcgtgaacatgttcttgactt 2900548  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaagg 256  Q
    |||||||||| | ||||| |||||||| || ||||||||    
T  2900547 ttttgaatcagttggtttcaaatgtcctgagaggaaagg 2900509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 49770245 - 49770507
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    |||||||| ||||||||||| || |||||||| ||||||||  | |||||| | ||||||    |||||||||| |||||||| ||  ||||||| || |    
T  49770245 gaaatatcgactggtttggacagttcaacaacatttcaaatgattaattcactaaggcaatccatccacattctgaatggaacagctcttatctctcttc 49770344  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | |||||| |||| || |||||| || | || |||||| | ||||| ||||| ||  | |  ||| | || ||||||||  ||||| |||| || |||||    
T  49770345 tacagccaacacctgaaacttacgatttattcgacgacataattctcctctcagacggacaaattgtgtatcaaggtccaagggaaaacgtcctcgaatt 49770444  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 280  Q
     |||||     | ||||| ||||||||||| ||||||||||| |||||||| || ||||||||    
T  49770445 ctttgagcatgttggtttcaaatgtccagagaggaaaggagtagcagattttttacaagaagt 49770507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 44213444 - 44213206
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcc 117  Q
    ||||| ||||||||  |||| || || |||||||||||||||||||  ||  |||||||| |||| |||||| | ||||| || ||  |||| ||||| |    
T  44213444 gaaatttctactggactggacagttccacaacttttcaaattgtgagctctctgaggcaatatgttcacattatgaatggcactgcagttatatcactgc 44213345  T
Q  118 tgcagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaatt 217  Q
    | |||||| |||| ||||||||  |||||||||| ||| ||||  || | |||||| | |   || ||||||| || ||||| ||| | || ||||| ||    
T  44213344 tccagccagcacctgagacttatgatctttttgatgacattatcttaatatctgatggccaagttgtataccatggcccccgcgaatatgttcttgactt 44213245  T
Q  218 ttttgaatcaatcggttttaaatgtccagataggaaagg 256  Q
    ||| ||||| || ||||| |||||||| || ||||||||    
T  44213244 tttcgaatctatgggtttcaaatgtcctgaaaggaaagg 44213206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 44236413 - 44236181
Alignment:
Q  24 tctactggtttggatagctcaacaacttttcaaattgtgaattcaatgaggcaagatgtccacattctcaatggaaccgccattatctcactcctgcagc 123  Q
    ||||||||  |||| || || ||||||||||| |||||||  ||  |||| ||| |||| |||||| | ||||| || ||  |||| ||||| || || |    
T  44236413 tctactgggctggacagttccacaacttttcagattgtgagctctctgagacaatatgttcacattatgaatggcactgcagttatatcactgctccaac 44236314  T
Q  124 caccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttga 223  Q
    || |||| ||||||||  |||||||||| ||| ||||  || |||||||| | |   || ||||||| || ||||| ||| | || ||||| ||||||||    
T  44236313 cagcacctgagacttatgatctttttgatgacattatcttaatctctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttga 44236214  T
Q  224 atcaatcggttttaaatgtccagataggaaagg 256  Q
    | |||| ||||| |||||||| || ||||||||    
T  44236213 aacaatgggtttcaaatgtcctgaaaggaaagg 44236181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 28941125 - 28941049
Alignment:
Q  120 cagccaccaccagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtcc 196  Q
    |||||| ||| |||||||||| |||||||| | ||| ||||| ||||||||||| | | |||| | |||||||||||    
T  28941125 cagccatcactagagacttactatcttttttatgacattattttactctctgatggacacattgtgtaccaaggtcc 28941049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 2163946 - 2163906
Alignment:
Q  18 gaaatatctactggtttggatagctcaacaacttttcaaat 58  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  2163946 gaaatatcaactggtttggacagttcaacaacttttcaaat 2163906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University