View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18926_low_48 (Length: 271)

Name: NF18926_low_48
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18926_low_48
NF18926_low_48
[»] chr8 (1 HSPs)
chr8 (18-125)||(42759992-42760099)
[»] chr5 (1 HSPs)
chr5 (18-127)||(1401747-1401856)
[»] scaffold0352 (1 HSPs)
scaffold0352 (132-255)||(16326-16457)
[»] chr2 (2 HSPs)
chr2 (21-124)||(25890436-25890538)
chr2 (18-91)||(4814639-4814712)
[»] chr4 (1 HSPs)
chr4 (21-91)||(37341966-37342036)
[»] chr7 (2 HSPs)
chr7 (21-91)||(23487027-23487097)
chr7 (21-91)||(23485516-23485586)
[»] chr3 (2 HSPs)
chr3 (21-87)||(50717264-50717330)
chr3 (21-87)||(50795518-50795584)
[»] chr6 (1 HSPs)
chr6 (18-78)||(445565-445625)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 42759992 - 42760099
Alignment:
Q  18 tggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaag 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759992 tggagccaaattattttagggctaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaag 42760091  T
Q  118 gaataaga 125  Q
    ||||||||    
T  42760092 gaataaga 42760099  T

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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 1401856 - 1401747
Alignment:
Q  18 tggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaag 117  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401856 tggagccaaattattttaaggttaactcattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaag 1401757  T
Q  118 gaataagaga 127  Q
    ||||||||||    
T  1401756 gaataagaga 1401747  T

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Target: scaffold0352 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 16326 - 16457
Alignment:
Q  132 attaggaaggcgtgataatagagtgaaaaagctgaaagggtgagcaaagaatttaaaggaacctg--------tgactacagttgcaggtgtattatttt 223  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||        |||||||||||||||||||||| ||||    
T  16326 attaggaaggcgtgagaatagagtgaaaaagatgaaagggtgagcaaaaaatttaaaggaacctgttttcaattgactacagttgcaggtgtattgtttt 16425  T
Q  224 tccttctcaagaaggattagagatctgctttg 255  Q
    |||||||||||||||||| |||||||||||||    
T  16426 tccttctcaagaaggatttgagatctgctttg 16457  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 25890436 - 25890538
Alignment:
Q  21 agccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataactttaaggaa 120  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||  |||||||     
T  25890436 agccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaagttgttgc-aacctaataagattaaggag 25890534  T
Q  121 taag 124  Q
    ||||    
T  25890535 taag 25890538  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 4814712 - 4814639
Alignment:
Q  18 tggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 91  Q
    |||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4814712 tggagccaaatttttttagggttagcttattagcattaattgctgctaatttggctccaaatctttagggttaa 4814639  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 37341966 - 37342036
Alignment:
Q  21 agccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 91  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  37341966 agccaaattattttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaa 37342036  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 23487097 - 23487027
Alignment:
Q  21 agccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 91  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  23487097 agccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatttttagggttaa 23487027  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 23485586 - 23485516
Alignment:
Q  21 agccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 91  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||||    
T  23485586 agccaaatttttttagggttaacttattagcattaattgctgctaattcggctcgaaatttttagggttaa 23485516  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 50717330 - 50717264
Alignment:
Q  21 agccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 87  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50717330 agccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50717264  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 50795518 - 50795584
Alignment:
Q  21 agccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 87  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50795518 agccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50795584  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 445565 - 445625
Alignment:
Q  18 tggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaa 78  Q
    |||||||||| | | |||||||||||   || |||||||||||||||||||||||||||||    
T  445565 tggagccaaaatttcttagggttaactcgttggcattaattgctgctaatttggctccaaa 445625  T

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