View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_5 (Length: 629)
Name: NF18926_low_5
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 10 - 611
Target Start/End: Complemental strand, 38697710 - 38697109
Alignment:
| Q |
10 |
catcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697710 |
catcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
38697611 |
T |
|
| Q |
110 |
cggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatct |
209 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697610 |
cggcatcactgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatct |
38697511 |
T |
|
| Q |
210 |
gagagagaccatcctgcaaacaatccaagtttacgtggctttgaagtaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697510 |
gagagagaccatcctgcaaacaatccaagtttacgtggctttgaagtaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcct |
38697411 |
T |
|
| Q |
310 |
gtgcagacattcttgctttcgcagctcgagacagtactcgcaaagttagtggtggcaggatagactactcagtcccatcaggacgcagagatggtcgagt |
409 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
38697410 |
gtgcagacattcttgcttttgcagctcgagacagtgctcgcaaagttagtggcggcagaatagactactcagtaccatcaggacgcagagatggtcgagt |
38697311 |
T |
|
| Q |
410 |
atctatcttcgacgaagtcacacaaaatctaccaccaccaaatttcaatgcagagcaacttatcgataattttgacagaaaaggtttgtcagctgatgaa |
509 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
38697310 |
gtctatcttcgacgaagtcacacaaaatttaccaccaccaactttcagtgcggagcaacttatcgataattttgatagaaaaggtttgtcagtagatgaa |
38697211 |
T |
|
| Q |
510 |
atggttacactttctggagctcattctattggtgtctcacgttgtccttctttctcaaaccgattatactctttcaattcaacttttcctcaagatcgtt |
609 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||| |||||||||||||||||| || |
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| T |
38697210 |
atggttacactttctggtgctcattctattggtgtctcacattgttcttcattctcaaaacgattatactctttcaatgcaacttttcctcaagatcctt |
38697111 |
T |
|
| Q |
610 |
ct |
611 |
Q |
| |
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|| |
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| T |
38697110 |
ct |
38697109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 611
Target Start/End: Original strand, 38628571 - 38629172
Alignment:
| Q |
10 |
catcatcaacatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628571 |
catcatcgacatctttgaagtatggtttctacaagacaacatgttcatccgtagaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccc |
38628670 |
T |
|
| Q |
110 |
cggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38628671 |
cggcatcgctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcaatct |
38628770 |
T |
|
| Q |
210 |
gagagagaccatcctgcaaacaatccaagtttacgtggctttgaagtaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcct |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38628771 |
gagagagaccatcctgcaaacaatccaagtttacgtggctttgaagtaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcct |
38628870 |
T |
|
| Q |
310 |
gtgcagacattcttgctttcgcagctcgagacagtactcgcaaagttagtggtggcaggatagactactcagtcccatcaggacgcagagatggtcgagt |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38628871 |
gtgcagacattcttgcttttgcagctcgagacagtgctcgcaaagttagtggcggcagaatagactactcagtaccatcaggacgcagagatggtcgagt |
38628970 |
T |
|
| Q |
410 |
atctatcttcgacgaagtcacacaaaatctaccaccaccaaatttcaatgcagagcaacttatcgataattttgacagaaaaggtttgtcagctgatgaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
38628971 |
gtctatcttcgacgaagtcacacaaaatttaccaccaccaactttcagtgcggagcaacttatcgataattttgatagaaaaggtttgtcagtagatgaa |
38629070 |
T |
|
| Q |
510 |
atggttacactttctggagctcattctattggtgtctcacgttgtccttctttctcaaaccgattatactctttcaattcaacttttcctcaagatcgtt |
609 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||| || |
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| T |
38629071 |
atggttacactttctggtgctcattctattggtgtctcacattgttcttcattctcaaaacgattatactctttcaatttaacttttcctcaagatcctt |
38629170 |
T |
|
| Q |
610 |
ct |
611 |
Q |
| |
|
|| |
|
|
| T |
38629171 |
ct |
38629172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 14256293 - 14256401
Alignment:
| Q |
49 |
catgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatga |
148 |
Q |
| |
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|||||||||| || |||||||| || ||||| || | ||||||||||||||||||| || || || | |||||| ||||||||||||||||||||||| |
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| T |
14256293 |
catgtccatctgctgaggcaatagtgagaagtgcaattgacaaagctgtttcactcaatcctggtataggtgctggattgattagaatgcattttcatga |
14256392 |
T |
|
| Q |
149 |
ttgctttgt |
157 |
Q |
| |
|
||||||||| |
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|
| T |
14256393 |
ttgctttgt |
14256401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 565
Target Start/End: Original strand, 14257539 - 14257616
Alignment:
| Q |
488 |
aaaaggtttgtcagctgatgaaatggttacactttctggagctcattctattggtgtctcacgttgtccttctttctc |
565 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||| ||||| |||||||| |||| |||| |||||||||| |
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| T |
14257539 |
aaaaggtttgtcaattgatgaaatggttacactctcaggagcacattcaattggtgtatcacattgttcttctttctc |
14257616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 265 - 606
Target Start/End: Complemental strand, 30652335 - 30651991
Alignment:
| Q |
265 |
aagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcctgtgcagacattcttgctttcgcagctcgagacagtactcgcaaagttagtggtgg |
364 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |
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| T |
30652335 |
aagctaagacacaaatagaggccgcatgtcctaaaactgtcttgtgtgcagacattctttttttca-agctcgagacagtactcgcaaagttagtggtag |
30652237 |
T |
|
| Q |
365 |
caggatagactactcagtcccatcaggacgcagagatggtcgagtatctatcttcgacgaagtcacacaaaatctaccaccaccaaatttcaatgcagag |
464 |
Q |
| |
|
| |||||||||||||| |||||| || |||||||||||| |||||||| ||||||| ||||||||||||||| | | ||| ||| | || |
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|
| T |
30652236 |
cgacatagactactcagtagcatcagtacatagagatggtcgaacctctatctttgacgaagcaacacaaaatctaccatcgtgatattccaacgtgtag |
30652137 |
T |
|
| Q |
465 |
caacttatcgataattttgacagaaaaggtttgtcagctga-------tgaaatggttacactttctggagctcattctattggtgtctcacgttgtcct |
557 |
Q |
| |
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|||||||| || ||||| ||||||||| ||| ||| || |||||||||||||||||| ||||||| ||||||||| ||||| | ||| | |
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| T |
30652136 |
gaacttatcaatcgttttgctagaaaaggtctgttagcggatgaaaattgaaatggttacactttccggagctcgttctattggagtctcgcattg---t |
30652040 |
T |
|
| Q |
558 |
tctttctcaaaccgattatactctttcaattcaacttttcctcaagatc |
606 |
Q |
| |
|
||||||||||| | ||||||||||||| | ||| ||| ||||||||| |
|
|
| T |
30652039 |
tctttctcaaattggttatactctttcattgaaaccttttctcaagatc |
30651991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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