View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_50 (Length: 262)
Name: NF18926_low_50
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 10874323 - 10874111
Alignment:
| Q |
14 |
ttcactgtctaccaccaaccccacttgtcccccttgcttatcctggaacattgagaaagcatcttaaatagaattacgtataaccctagaatgtaatcta |
113 |
Q |
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| T |
10874323 |
ttcactgtctaccaccaaccccacttgtcccccttgcttatcctggaacattgagaaagcatcttaaatagaattacgtataaccctagaaaataatctt |
10874224 |
T |
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| Q |
114 |
agattagaaactgattctaggagataaacaaagatactctaacattaaatcaaagtattctaa-aaaagtaacattttagaatttgcctttagtttgact |
212 |
Q |
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| T |
10874223 |
agattagaaactgattctaggagataaacaaagatactctaacattaaatcaaagtattctaaaaaaagtaacattttagaatttgcatttagtttgact |
10874124 |
T |
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| Q |
213 |
gttttcttctacg |
225 |
Q |
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| T |
10874123 |
gttttcttctacg |
10874111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 10861604 - 10861531
Alignment:
| Q |
14 |
ttcactgtctaccaccaaccccacttgtcccccttgcttatcctggaacattgagaaagcatcttaaatagaat |
87 |
Q |
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| T |
10861604 |
ttcacagtctacaaccagccccacttgtcctccttgcttatcctggacaattgagacaacatcttaaagagaat |
10861531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 20302417 - 20302476
Alignment:
| Q |
110 |
tctaagattagaaactgattctaggagataaacaaagatactc-taacattaaatcaaag |
168 |
Q |
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| T |
20302417 |
tctaagattagaaactaatcctaggagataaactaatatactcttaacataaaatcaaag |
20302476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 21089049 - 21089108
Alignment:
| Q |
110 |
tctaagattagaaactgattctaggagataaacaaagatactc-taacattaaatcaaag |
168 |
Q |
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| T |
21089049 |
tctaagattagaaactaatcctaggagataaactaatatactcttaacataaaatcaaag |
21089108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 28876901 - 28876948
Alignment:
| Q |
109 |
atctaagattagaaactgattctaggagataaacaaagatactctaac |
156 |
Q |
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| T |
28876901 |
atctaagattagaaattgattctacgagattaactaagatactctaac |
28876948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 14303640 - 14303668
Alignment:
| Q |
112 |
taagattagaaactgattctaggagataa |
140 |
Q |
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| T |
14303640 |
taagattagaaactgattctaggagataa |
14303668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 15486141 - 15486097
Alignment:
| Q |
111 |
ctaagattagaaactgattctaggagataaacaaagatactctaa |
155 |
Q |
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| T |
15486141 |
ctaagattgaaaactgatcctaggagataaaccaagatactctaa |
15486097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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