View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18926_low_55 (Length: 254)
Name: NF18926_low_55
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38152788 - 38153020
Alignment:
| Q |
1 |
gaaattaaatcgattacaataatgtaagtatagagtgaaacaaaatataaattgactttcaaatcatagccttataagtgagcaaactattatatgagga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152788 |
gaaagtaaatcgattacaataatgtaagtatagagtgaaacaaaatataaattgactttcaaatcatagccttataagtgagcaaactattatatgagga |
38152887 |
T |
|
| Q |
101 |
ccaatatgcagaagaaaaaactagaacataattgaaagcataatttaattagttaaatttcttatttaaaagataattatatagttagtataccgcagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
38152888 |
ccaatatgcagaagaaaaaactagaacataactgaaagcataatttaattagttaaatttcttatttaaaagataattaaatagttagt----cgcagaa |
38152983 |
T |
|
| Q |
201 |
gtatagaagaaaattagtgaacagtccgtgaagatag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152984 |
gtatagaagaaaattagtgaacagtccgtgaagatag |
38153020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 38159145 - 38159235
Alignment:
| Q |
30 |
atagagtgaaacaaaatataaattgactttcaaatcatagccttataagtgagcaaactattatatgaggaccaatatgcagaagaaaaaa |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||| ||| || |||||| |
|
|
| T |
38159145 |
atagagtgaaacaaattataaattgactttcaaatcatacccttgtaagtgaacaaggaattatatgaggaccaataagcaaaaaaaaaaa |
38159235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University