View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18926_low_58 (Length: 248)
Name: NF18926_low_58
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45074696 - 45074465
Alignment:
| Q |
1 |
ctacaccctgtgaattgctgccagagaaagaaaaatttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgcaactt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45074696 |
ctacaccctgtgaattgctggcagagaaagaaaaatttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgtaactt |
45074597 |
T |
|
| Q |
101 |
caaaagtagtgtcgttagataaaatggatgtaacnnnnnnnnnnnnnnnaatgaaataatatggatgattttgaactttatattatcagattatataatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45074596 |
caaaagtagtgtcattagataaaatggatgtaactttttttttctttttaatgaaataatatggatgattttgaactttatattatcagattatataatg |
45074497 |
T |
|
| Q |
201 |
gtagcaaaggttattttcttgcatgatagtat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45074496 |
gtagcaaaggttattttcttgcatgatagtat |
45074465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 45077918 - 45077797
Alignment:
| Q |
9 |
tgtgaattgctgccagagaaagaaaaatttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgcaacttcaaaagta |
108 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
45077918 |
tgtgaattgctgcaagagaaggaaa---ttgaatgtccttttccaacagataaactagccatcgaaaatgttcaattcaagacttgtaacttccaaagta |
45077822 |
T |
|
| Q |
109 |
gtgtcgttagataaaatggatgtaa |
133 |
Q |
| |
|
||||| | ||||| |||||||||| |
|
|
| T |
45077821 |
gtgtcttctgataacatggatgtaa |
45077797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 45082189 - 45082113
Alignment:
| Q |
37 |
ttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgcaacttcaaaagtagtgtc |
113 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
45082189 |
ttgaatgtccttttccaagagataaactacccattgaaaatgttcaattcaagacttgcaacttccaaagtagtgtc |
45082113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 45067101 - 45067040
Alignment:
| Q |
39 |
gaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgcaactt |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
45067101 |
gaatgtccttttccaacagataaactacccattgaaaatgttcagttcaagacttgtaactt |
45067040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 12698065 - 12697989
Alignment:
| Q |
37 |
ttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgcaacttcaaaagtagtgtc |
113 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
12698065 |
ttgaatgtccttttccaacagttaaactacccattgaaaatgttctgttcaagacttgtaactttcaaagtagtgtc |
12697989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 34504429 - 34504354
Alignment:
| Q |
37 |
ttgaatgtccttttccaactgataaacttaccattgaaaatgttcagttcaagacttgcaacttcaaaagtagtgt |
112 |
Q |
| |
|
|||||||||| |||||||| |||||| | | |||||| ||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
34504429 |
ttgaatgtccctttccaacagataaattggctattgaagatgttcagttcaagacttgtaacattaaaagtagtgt |
34504354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University