View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_6 (Length: 603)
Name: NF18926_low_6
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_6 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 40 - 589
Target Start/End: Original strand, 6138599 - 6139148
Alignment:
| Q |
40 |
catactcatcaagacaacgtcaacatgtcgtcatcatcttcatcaacatcttggagggactttgacaacacgatgaacgacgctgctcttgcacgtgaag |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6138599 |
catactcatcaagacaacgtcaacatgtcgtcatcatcttcatcaacatcttggagggactttgacaacacgatgaacgacgctgctcttgcacgtgcag |
6138698 |
T |
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| Q |
140 |
gaccaagtacttatggtactacttctgctacttggtctccactttatagtcctcctcgtggtacaataggtctttttgaagatgatcgtccaattccata |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6138699 |
gaccaagtacttatggtactacttctgctacttggtctccactttatagtcctcctcgtggtacaataggtctttttgaagatgatcgtccaattccata |
6138798 |
T |
|
| Q |
240 |
tcataatgcacctcattctgattttctcactgagcctctcgatattcctagcatgttacgtcgtcaagagcatcctaggacaaacttcaatataggaaga |
339 |
Q |
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| T |
6138799 |
tcataatgcacctcattctgattttctcactgagcctctcgatattcctagcatgttatgtcgtcaagagcatcctaggacaaacttcaacataggaaga |
6138898 |
T |
|
| Q |
340 |
cacgatccttctcctgcttctagatccgcctatgcatcatttctatatccctctacagcaacaggtgcagcaagaggttcttcttctcgaagcacaagcc |
439 |
Q |
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| T |
6138899 |
cacgatccttctcctgcttctagatccgcctatgcatcatttctatatccctctacaacaacaggtggagcaagaggttcttcttctcgaagcacaagcc |
6138998 |
T |
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| Q |
440 |
ggaggcagaataacaacaataacgtggacatctttgatcttattcatgaacaacgaatggatgaagcatatgctgaaaacatgataaatgttcaacaaca |
539 |
Q |
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| T |
6138999 |
ggaggcagaacaacaacaataacgtggacatctttgatcttattcatgaacaacgaatggatgaagcatatgctgaaaatatgataaatgttcaacaaca |
6139098 |
T |
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| Q |
540 |
tgcaaggttattgccaggaggccgtgtaaatcgatttagtgttccaacta |
589 |
Q |
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| T |
6139099 |
tgcaaggttattgccaggaggccgtgtaaatcgatttagtgttccaacta |
6139148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 33731335 - 33731270
Alignment:
| Q |
372 |
tgcatcatttctatatccctctacagcaacaggtgcagcaagaggttcttcttctcgaagcacaag |
437 |
Q |
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| T |
33731335 |
tgcatcatttctatatccctctgcagcaacaagagaagcaacaagttcttcttctcaaggcacaag |
33731270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 33802714 - 33802649
Alignment:
| Q |
372 |
tgcatcatttctatatccctctacagcaacaggtgcagcaagaggttcttcttctcgaagcacaag |
437 |
Q |
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| T |
33802714 |
tgcatcatttctatatccctctgcagcaacaagagaagcaacatgttcttcttctcaaggcacaag |
33802649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 8185 - 8138
Alignment:
| Q |
537 |
acatgcaaggttattgccaggaggccgtgtaaatcgatttagtgttcc |
584 |
Q |
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||||| ||||||||||| ||||||| |||| ||||||||||||||||| |
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| T |
8185 |
acatgtaaggttattgcaaggaggctgtgtcaatcgatttagtgttcc |
8138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 18784 - 18737
Alignment:
| Q |
537 |
acatgcaaggttattgccaggaggccgtgtaaatcgatttagtgttcc |
584 |
Q |
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| T |
18784 |
acatgtaaggttattgcaaggaggctgtgtcaatcgatttagtgttcc |
18737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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