View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_61 (Length: 239)
Name: NF18926_low_61
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_61 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 12652624 - 12652404
Alignment:
| Q |
19 |
ttaataacattcctcttcgtcaaaatcataaatctaataacaatgttcatcaatctcttgattaaaaacttattgaactacataaaaaataaaatattca |
118 |
Q |
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| T |
12652624 |
ttaataacattcctcttcgtcaaaatcataaatctaataacaatgttcatcaatctcttgattaaaaacttattgaactacataaaaaattaaacattca |
12652525 |
T |
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| Q |
119 |
ttcctccaaaagaaagaaggttttccttgtaatttataatttgcaacattcgtggctctccattaacccaaacttcctcaatcctttgggtacttaaatc |
218 |
Q |
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| T |
12652524 |
ttcctccaaaagaaagaaggttttccttgtaacttataatttgcaaccttcgtggctctccattaacacaaacttcctcaatcctttgggtacttaaatc |
12652425 |
T |
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| Q |
219 |
aaaacatgctgactttgtatc |
239 |
Q |
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| T |
12652424 |
aaaacatgctaactttgtatc |
12652404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 12647416 - 12647301
Alignment:
| Q |
113 |
tattcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacattcgtggctctccattaacccaaacttcctcaatcctttgggtact |
212 |
Q |
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| T |
12647416 |
tattcattactccgaaagaaagaaggtttttcttataagttataatttgcaacctttgtggctcttcattaacccaaatttcctcaatcctttgggtact |
12647317 |
T |
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| Q |
213 |
taaatcaaaacatgct |
228 |
Q |
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| T |
12647316 |
taaatcaaaacatgct |
12647301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 12725163 - 12725053
Alignment:
| Q |
113 |
tattcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacat---tcgtggctctccattaacccaaacttcctcaatcctttgggt |
209 |
Q |
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| T |
12725163 |
tattcattcctacaaaagaaagaagattttccttataagttacgatctgcaaccaagctggtgactctgctttaaccccaatttcctcaatcctttgggt |
12725064 |
T |
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| Q |
210 |
acttaaatcaa |
220 |
Q |
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| T |
12725063 |
acttaaatcaa |
12725053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 12706034 - 12705925
Alignment:
| Q |
110 |
aaatattcattcctccaaaagaaagaaggttttccttgtaatttataatttgcaacattcgtggctctccattaacccaaacttcctcaatcctttgggt |
209 |
Q |
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| T |
12706034 |
aaatattaattccttcaaaagaaagaaggttttccttataaacaataatttgcaacccagctgactctcctttgaccttgatctcctcaatcctttgggt |
12705935 |
T |
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| Q |
210 |
acttaaatca |
219 |
Q |
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| T |
12705934 |
acttaaatca |
12705925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 12647454 - 12647417
Alignment:
| Q |
19 |
ttaataacattcctcttcgtcaaaatcataaatctaat |
56 |
Q |
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| T |
12647454 |
ttaatagcattcctcttcatcaaaatcataaatctaat |
12647417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 12711586 - 12711622
Alignment:
| Q |
110 |
aaatattcattcctccaaaagaaagaaggttttcctt |
146 |
Q |
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| T |
12711586 |
aaatattaattccttcaaaagaaagaaggttttcctt |
12711622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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