View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_7 (Length: 603)
Name: NF18926_low_7
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 32666746 - 32667333
Alignment:
| Q |
1 |
cgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgttgccggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666746 |
cgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagccgttgccggct |
32666845 |
T |
|
| Q |
101 |
tcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666846 |
tcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacc |
32666945 |
T |
|
| Q |
201 |
tcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaaaccaagagat |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666946 |
tcttgtccttttattagcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaaaccaagagat |
32667045 |
T |
|
| Q |
301 |
agtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagacgtggcgccggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667046 |
agtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagacgtggcgccggc |
32667145 |
T |
|
| Q |
401 |
cttttaggtctccgaggcgtccgaataggagctgaccgaaggcggttcctaggagtgcgacggagacaagagctgagaccacgaccgggttgacttgacg |
500 |
Q |
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| T |
32667146 |
cttttaggtctccgaggcgtccgaataggagctgaccgaaggcggttcctaggagtgcaacggagacaagggctgagaccacgaccgggttgacttgacg |
32667245 |
T |
|
| Q |
501 |
gatttcttggtggtcagagtagtatattcttcctagcatctttgtgatgagtgtgatggagaagaggtcataagagtcagtgaaaagt |
588 |
Q |
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| T |
32667246 |
gatttcttggtggtcggagtagtatattcttcctagcatctttgtgatgagtgtgatggaaaaaaggtcataagagtcagtgaaaagt |
32667333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 298
Target Start/End: Original strand, 37315765 - 37315913
Alignment:
| Q |
150 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaagga |
249 |
Q |
| |
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|||||| || |||||||||||||||| |||||||| ||||||||| | || | ||| |||| || ||| | ||||||||||| |||| || | ||| |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagtagctgaaagaggg |
37315864 |
T |
|
| Q |
250 |
taatcaccaccaattccaagccctaagaagaatctaaagaaaccaagag |
298 |
Q |
| |
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| T |
37315865 |
taatcaccaccaataccaaaacctagccagaatctaaagaaacaaagag |
37315913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 33109402 - 33109294
Alignment:
| Q |
160 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
259 |
Q |
| |
|
||||| |||||||||| ||| || ||||| ||||||| |||| ||| | || || ||| ||||||||||||| |||| ||| | ||| |||||||||| |
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| T |
33109402 |
ccaaatccttgcatagcaaacactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccac |
33109303 |
T |
|
| Q |
260 |
caattccaa |
268 |
Q |
| |
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||||||||| |
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| T |
33109302 |
caattccaa |
33109294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 33115437 - 33115329
Alignment:
| Q |
160 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
259 |
Q |
| |
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||||| |||||||||| ||||| || |||||||| | ||| | ||| ||||||||||| |||||||||| || |||| || | ||| |||||||| | |
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| T |
33115437 |
ccaaaaccttgcatagcgaaaacagccgctataaatgcaccacgagtctttttatttgcatactcagacatgatagtagctgaaagagggtaatcaccgc |
33115338 |
T |
|
| Q |
260 |
caattccaa |
268 |
Q |
| |
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||||||||| |
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|
| T |
33115337 |
caattccaa |
33115329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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