View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18926_low_8 (Length: 587)
Name: NF18926_low_8
Description: NF18926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18926_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 172 - 571
Target Start/End: Original strand, 27143864 - 27144263
Alignment:
| Q |
172 |
attcattttgtatatagatgttactaaaatatcctattgtgtaaagatgtgttaaatttggacttttcatcttctaagacaaattcgtagtataaataag |
271 |
Q |
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| T |
27143864 |
attcattttgtatatagatgttactaaaatatcctattgtgtaaagatgtgttaaatttggacttttcatcttctaagacaaattcgtagtataaataag |
27143963 |
T |
|
| Q |
272 |
ggatatattttgaaaaataataactaatgtatctactctactaattaaaatgaggtgtatatttagcgatttttatataaacggggcttataattagaga |
371 |
Q |
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| T |
27143964 |
ggatatattttgaaaaataataattaatctatctactctactaattaaaatgaggtttatatttagcgatttttatataaacggggcttataattagaga |
27144063 |
T |
|
| Q |
372 |
cagagctagtatttaccagattttggataagagcttaagttcaaaagaaaacctgtccatttgatccatatgcagtgtatagtaaattccctttctcctc |
471 |
Q |
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| T |
27144064 |
cagagctagtattaaccagattttggataagagcttaagttcaaaagaaaacctgtccatttgatccatatgcagtgtatagtaaattccctttctcctc |
27144163 |
T |
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| Q |
472 |
atttccaccgcatttgcgaattgcagaagctaaaaattgagcctttgttgcactttgtgctacaaaaatgaagacaataaagtcaatggaatttgaatat |
571 |
Q |
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| T |
27144164 |
atttccaccgcatttgcgaattgcagaagctaaaaattgagcctttgttgcactttgtgctacaaaaatgaagacaataaagtcaatggaatttgaatat |
27144263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 27143645 - 27143840
Alignment:
| Q |
8 |
attattctatgtaattattgataaatcaacacaacacatctttatccatttttcacttgaagaggtgcagattgtgctgataataagataaatcttacca |
107 |
Q |
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| T |
27143645 |
attattctgtgtaattattgataaatcaacacaacacatctttatccatttttcacttgaagaggtgcagattgtgctgataataagataaatcttacca |
27143744 |
T |
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| Q |
108 |
atgtacacttactaaagtttgaaaataactaaagcataatagatcaaactgacattgatctagaattcattttgtatatagatgttactaaaatat |
203 |
Q |
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| T |
27143745 |
atgtacacttactaaagtttgaaaataactaaagcataatagatcaaactgacattgatctagaattcattttgtatatagatgttactaaaatat |
27143840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 41162857 - 41162905
Alignment:
| Q |
233 |
acttttcatcttctaagacaaattcgtagtataaataagggatatattt |
281 |
Q |
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| T |
41162857 |
acttttcatattccaagacaaattggtagtattaataagggatatattt |
41162905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 48030305 - 48030257
Alignment:
| Q |
233 |
acttttcatcttctaagacaaattcgtagtataaataagggatatattt |
281 |
Q |
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| T |
48030305 |
acttttcatattccaagataaatttgtagtattaataagggatatattt |
48030257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 33983879 - 33983833
Alignment:
| Q |
232 |
gacttttcatcttctaagacaaattcgtagtataaataagggatatat |
279 |
Q |
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| T |
33983879 |
gacttttcatcttctaagacagatt-gtagtattaataagggatatat |
33983833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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