View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_high_16 (Length: 255)
Name: NF18927_high_16
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 45650104 - 45650331
Alignment:
| Q |
12 |
tatctcacaccagtatataactgatcaagatccatgaaacagtgaaaaataaagcaacatttggtgagatactagtagatgaagatgcactttgtgtgga |
111 |
Q |
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| T |
45650104 |
tatctcacaccagtatataactgatcaagatccatgaaacagtgaaaaataaagcaacaattggtgagatactagtagatgaagatgcactttgtgtgga |
45650203 |
T |
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| Q |
112 |
aggagtagtggtggtggttgcagcaggggtgccatcggaaggtgaacctttccctgatggcgatggtgttgcagaaggagcagaagcagcactagaagaa |
211 |
Q |
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| T |
45650204 |
aggagtagtggtggtggttgcagcaggggtgccatcagaaggtgaacctttccctgatggcgatggtgttgcagaaggagcagaagaagcactagaagaa |
45650303 |
T |
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| Q |
212 |
gacttaaccttaacagaaagtttcatgc |
239 |
Q |
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| T |
45650304 |
gccttaactttaacagaaagtttcatgc |
45650331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 45642868 - 45643031
Alignment:
| Q |
34 |
gatcaagatccatgaaacagtgaaaaataaagcaacatttggtgagatactagtagatgaagatgcactttgtgtggaaggagtagtggtggtg---gtt |
130 |
Q |
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| T |
45642868 |
gatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtatggtaggagtagtggtggtggttgtt |
45642967 |
T |
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| Q |
131 |
gcagcaggggtgccatcggaaggtgaacctttccctgatggcgatggtgttgcagaaggagcag |
194 |
Q |
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| T |
45642968 |
gcggcaggggtgcgatcggaaggtgaacctttccctgatggtaatggtgttgcagaaggagcag |
45643031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 45703594 - 45703423
Alignment:
| Q |
13 |
atctcacaccagtatataactgatcaagatccatgaaacagtgaaaaataaagcaacatttggtgagatactagtagatgaagatgcactttgtgtggaa |
112 |
Q |
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| T |
45703594 |
atctcacaccaatatttaattgatcaagatccatgaaacaataaaaaagaaggcaacaattggtgagatacaagtagctgaagatgcactttgcatggta |
45703495 |
T |
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| Q |
113 |
ggagtagtggtggtggttgcagcaggggtgccatcggaaggtgaacctttccctgatggcgatggtgttgca |
184 |
Q |
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| T |
45703494 |
ggagtggtggtggttgttgcggcgggggtgtcatcggaaggtaaaccttttcctgatggtgatggtgctgca |
45703423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 45887400 - 45887229
Alignment:
| Q |
13 |
atctcacaccagtatataactgatcaagatccatgaaacagtgaaaaataaagcaacatttggtgagatactagtagatgaagatgcactttgtgtggaa |
112 |
Q |
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||||||||||| ||| ||| |||||||||||||||||||| | ||||| || |||||| |||||||||||| ||||| ||||||||||||||| ||| | |
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| T |
45887400 |
atctcacaccaatatttaattgatcaagatccatgaaacaataaaaaagaaggcaacaattggtgagatacaagtagctgaagatgcactttgcatggta |
45887301 |
T |
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| Q |
113 |
ggagtagtggtggtggttgcagcaggggtgccatcggaaggtgaacctttccctgatggcgatggtgttgca |
184 |
Q |
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| T |
45887300 |
ggagtggtggtggttgttgcggcgggggtgtcatcggaaggtaaaccttttcctgatggtgatggtgctgca |
45887229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 45703371 - 45703323
Alignment:
| Q |
149 |
gaaggtgaacctttccctgatggcgatggtgttgcagaaggagcagaag |
197 |
Q |
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| T |
45703371 |
gaaggtgaaccttttcctgatggtgatggtgcagcagaaggagcagaag |
45703323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 45887177 - 45887132
Alignment:
| Q |
149 |
gaaggtgaacctttccctgatggcgatggtgttgcagaaggagcag |
194 |
Q |
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| T |
45887177 |
gaaggtgaaccttttcctgatggtgatggtgcagcagaaggagcag |
45887132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 1193691 - 1193586
Alignment:
| Q |
32 |
ctgatcaagatccatgaaacagtgaaaaataaag---caacatttggtgagatactagtagatgaagatgcactttgtgtggaaggagtagtggtggtgg |
128 |
Q |
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| T |
1193691 |
ctgatcaagatccatgaaacaatgaaaaataaagaagcaacaattggttagagcctagtagctgaagatgcactttgcgtagtaggagtagtggtggtag |
1193592 |
T |
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| Q |
129 |
ttgcag |
134 |
Q |
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|||||| |
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| T |
1193591 |
ttgcag |
1193586 |
T |
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