View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18927_high_18 (Length: 245)
Name: NF18927_high_18
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 27159925 - 27160039
Alignment:
| Q |
113 |
ccataaaggtaaataaacaccctaacacattttcaatttcaggttgcattaagatggctaatagagcaaggtgctactccaattgtgaagagcttcaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27159925 |
ccataaaggtaaataaacaccctaacacattttcaatttcaggttgcattaagatggctaatagagcaaggtgctactccaattgtgaagagcttcaaca |
27160024 |
T |
|
| Q |
213 |
aggagagaatgaaaa |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27160025 |
aggagagaatgaaaa |
27160039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27159824 - 27159877
Alignment:
| Q |
1 |
cattttaaatgtagagaagtggatgtccgggtttgaatctcatcccctgcatat |
54 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
27159824 |
cattttaaatgtggagaaatgggtgtccgggttcgaatctcatcccctgcatat |
27159877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 27441288 - 27441320
Alignment:
| Q |
194 |
attgtgaagagcttcaacaaggagagaatgaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
27441288 |
attgtgaagagcttcaacaaggagaggatgaaa |
27441320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18101542 - 18101510
Alignment:
| Q |
1 |
cattttaaatgtagagaagtggatgtccgggtt |
33 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
18101542 |
cattttaaatgtggagaagtggatgtccgggtt |
18101510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University