View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18927_high_4 (Length: 549)
Name: NF18927_high_4
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_high_4 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 148 - 549
Target Start/End: Complemental strand, 12271594 - 12271192
Alignment:
| Q |
148 |
gagagctaagctctcataaagaaggttcccgtcacatcacttcgcatgataggaaggagatatgccagaggagagtcatgatgaaggagttcaaaatttg |
247 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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|
| T |
12271594 |
gagagctaagctctcataaaaaaggtttccgtcgcatcactttgcatgataggaaggagacctgccgcaggagagtcatgacgaaggagttcaaaatttg |
12271495 |
T |
|
| Q |
248 |
atgaagcaccaagctta-ccataaaatctgcacattgattcccctcgcgaagggtgtggataaccgagacatttccatattgaattaagtctctaatgtc |
346 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271494 |
atgaaacaccaagtttagccataaaatctgcatattaattcccctcgctaagggtgtggataaccgagacatttccatattgaattaagtctctaatgtc |
12271395 |
T |
|
| Q |
347 |
ttgaatcaaaaccgcataaacatgaaaattcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggtaataccc |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
12271394 |
ttgaatcaaaaccgcataaacatgaaaattcaaaggggtgcctttgatgatgttgatacaatgtaaagagtctgaataacaaactaggttggtaataccc |
12271295 |
T |
|
| Q |
447 |
atgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctgacaagaaga |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271294 |
atgtctttagtcatcaagagaccatgatagatggcatataactcagcatacaaaatgtcagaagaatttggaatgtagccagaaaagcctgacaagaaga |
12271195 |
T |
|
| Q |
547 |
aac |
549 |
Q |
| |
|
||| |
|
|
| T |
12271194 |
aac |
12271192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 438 - 549
Target Start/End: Original strand, 11376309 - 11376420
Alignment:
| Q |
438 |
gtaatacccatgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctg |
537 |
Q |
| |
|
||||||||||| ||||| | || ||| ||||| | ||||||| |||| | |||||||||||| |||||||| |||||| ||||||| | ||||||||||| |
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|
| T |
11376309 |
gtaatacccatttctttggccaacaaaagacccttatagatggcatagagctcagcatacaagatatcagatgaattttgaatgtatctagaaaagcctg |
11376408 |
T |
|
| Q |
538 |
acaagaagaaac |
549 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11376409 |
acaagaaaaaac |
11376420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 549
Target Start/End: Original strand, 26333922 - 26334129
Alignment:
| Q |
342 |
atgtcttgaatcaaaaccgcataaacatgaaaattcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggtaa |
441 |
Q |
| |
|
||||||||||| ||||| ||||| |||| || ||| |||| ||| || | |||||||||||| |||||||| ||||| || |||| | || |||| |
|
|
| T |
26333922 |
atgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaacaaaattagtaa |
26334021 |
T |
|
| Q |
442 |
tacccatgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctgacaa |
541 |
Q |
| |
|
||||||| ||||| | || ||||| ||| | ||||||| |||| | | || ||||||| |||||||| |||||| ||||||| |||||||| ||||||| |
|
|
| T |
26334022 |
tacccatttctttggccaacaagatacccttatagatggcataaagcccaacatacaagatatcagatgaattttgaatgtacacagaaaagtctgacaa |
26334121 |
T |
|
| Q |
542 |
gaagaaac |
549 |
Q |
| |
|
||| |||| |
|
|
| T |
26334122 |
gaaaaaac |
26334129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 542
Target Start/End: Original strand, 50822891 - 50823094
Alignment:
| Q |
337 |
ctctaatgtcttgaatcaaaaccgcataaacatgaaaattcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggtt |
436 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| ||||||| ||| |||| || |||| |||||||||| |||||||||||||||| || |||| | | |
|
|
| T |
50822891 |
ctcttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatc |
50822990 |
T |
|
| Q |
437 |
ggtaatacccatgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcct |
536 |
Q |
| |
|
||||||| ||| ||||| | || ||||||||| | ||||||| |||| | |||| ||||||| || || | |||||| ||||||| |||||||||||| |
|
|
| T |
50822991 |
agtaatactcatttctttggccaacaagagacccttatagatggcataaagctcatcatacaagat--caaatgaattttgaatgtatccagaaaagcct |
50823088 |
T |
|
| Q |
537 |
gacaag |
542 |
Q |
| |
|
|||||| |
|
|
| T |
50823089 |
gacaag |
50823094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 18401390 - 18401328
Alignment:
| Q |
342 |
atgtcttgaatcaaaaccgcataaacatgaaaattcaagggggtgcctttgatgatgttgata |
404 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |||||| ||| ||| |||||||||||||| |
|
|
| T |
18401390 |
atgtcttgaatcaaaacagcataagcatgaaacttcaagagggggccggtgatgatgttgata |
18401328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 148 - 542
Target Start/End: Complemental strand, 35533133 - 35532736
Alignment:
| Q |
148 |
gagagctaagctctcataaagaaggttcccgtcacatcacttc--gcatgataggaaggagatatgccagaggagagtcatgatgaaggagttcaaaatt |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||||||| | | ||||||||| ||| || | || ||||||| || ||||||| |||||||| |
|
|
| T |
35533133 |
gagagctaaactctcataaagaaggttccagtcgcatcactttttggaggataggaagaagaactgtcggatgagagtcgcgacgaaggagctcaaaatt |
35533034 |
T |
|
| Q |
246 |
tgatgaagcaccaagcttac-cataaaatctgcacattgattcccctcgcgaagggtgtggataaccgagacatttccatattgaattaagtctctaatg |
344 |
Q |
| |
|
||| |||||||||| |||| |||| | |||||||||||||| ||||| ||||| |||||||||||||||| |||||||| | |||||| ||||||||| |
|
|
| T |
35533033 |
tgaagaagcaccaaacttagtcatatagtctgcacattgatttccctcacgaagtgtgtggataaccgagatatttccatgctcaattaaatctctaatg |
35532934 |
T |
|
| Q |
345 |
tcttgaatcaaaaccgcataaacatgaaaattcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggtaatac |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| || | |||| |||||||||||||||||| |
|
|
| T |
35532933 |
tcttgaatcaaaaccgcataaacatgaaacttcaaggaggtgcctttgatgatgttgatacaatgtaaagaatcggcataacaaactaggttggtaatac |
35532834 |
T |
|
| Q |
445 |
ccatgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctgacaag |
542 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35532833 |
ccatgtcttcagtcagcaaaagaccatgatagatgacatataactcaacatacaaaatgtcagaagaatttggaatgtatccagaaaagcctgacaag |
35532736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 44993823 - 44993725
Alignment:
| Q |
148 |
gagagctaagctctcataaagaaggttcccgtcacatcacttcgcatgataggaaggagatatgccagaggagagtcatgatgaaggagttcaaaattt |
246 |
Q |
| |
|
||||||||| |||||||||||||| || || ||||||| ||| ||| |||| |||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
44993823 |
gagagctaaactctcataaagaagatttcctctgaatcactttgcaggattggaaaaagatctgccggaggagagtcatgatgaaggagctcaaaattt |
44993725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 340 - 542
Target Start/End: Original strand, 34295397 - 34295598
Alignment:
| Q |
340 |
taatgtcttgaatcaaaaccgcataaacatgaaaattcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggt |
439 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||| ||| ||||||||| ||||||||| |||||||| ||| || | ||| ||||||||| |
|
|
| T |
34295397 |
taatgtcttgaatcaaaaccgcataaacacgaaattttaaggaggtatctttgatgaagttgatata-tgtaaagaatcataacagcaaaataggttggt |
34295495 |
T |
|
| Q |
440 |
aatacccatgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctgac |
539 |
Q |
| |
|
||||||||| |||||||| | ||||| ||||||||||| |||||||||| |||||| ||| |||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
34295496 |
aatacccatatctttagttagcaagacaccatgatagaatgcatataactcgtcatacataatgtcagaagaatttaaaatgtagtcagaaaatcctgac |
34295595 |
T |
|
| Q |
540 |
aag |
542 |
Q |
| |
|
||| |
|
|
| T |
34295596 |
aag |
34295598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 45468781 - 45468861
Alignment:
| Q |
49 |
ttaaactgcttacaggtaataagattaagaagttgtgatagcacttgaacaagagtaatgtgatgtgtttcctcttctatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45468781 |
ttaaactgcttacaggtaataagattaagaagttgtgatagcacttgaacaagagtaatgtgatgtgtttcctcttctatg |
45468861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 39220304 - 39220223
Alignment:
| Q |
49 |
ttaaactgcttacaggt--aataagattaagaagttgtgatagcacttgaacaagagtaatgtgatgtgtttcctcttctat |
128 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39220304 |
ttaaactgcttactggtttaataagattaagaagttgtaataacacttgaacaagagaaatgtgatgtgtttcctcttctat |
39220223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 277 - 478
Target Start/End: Complemental strand, 26757857 - 26757655
Alignment:
| Q |
277 |
cacattgattcccctcgcgaagggtgtggataaccgagacatttccatattgaattaagtctctaatgtcttgaatc-aaaaccgcataaacatgaaaat |
375 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||||||||||||||| | || |||||| | | | |||| ||||||| |||||||||||||| ||| | | |
|
|
| T |
26757857 |
cacattggttcccttcacgaagggtatggataaccgagacatttccttgttcaattaatttttttatgttttgaatcaaaaaccgcataaacttgatatt |
26757758 |
T |
|
| Q |
376 |
tcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggtaatacccatgtctttagtcatcaagagaccatgata |
475 |
Q |
| |
|
|||||| || || |||||||||||| ||| || | ||| ||| |||| ||||||| || | |||||||||||||||| || |||||||| ||||| |
|
|
| T |
26757757 |
tcaaggaggggcgtttgatgatgttaataccatgaagagaatcataatagaaaactagcttagggatacccatgtctttagccaacaagagactgtgata |
26757658 |
T |
|
| Q |
476 |
gat |
478 |
Q |
| |
|
||| |
|
|
| T |
26757657 |
gat |
26757655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 31942654 - 31942866
Alignment:
| Q |
278 |
acattgattcccctcgcgaagggtgtggataaccgagacatttccatattgaattaagtc--tctaatgtcttgaatcaaaaccgc----ataaacatga |
371 |
Q |
| |
|
|||||||||||| || |||| ||| |||||||||||||||||||| | | |||||| || | | ||||||||||||||| || | |||||||||| |
|
|
| T |
31942654 |
acattgattcccttcacgaaaggtatggataaccgagacatttccttgctcaattaaatcttttttatgtcttgaatcaaagccacatatataaacatga |
31942753 |
T |
|
| Q |
372 |
aaattcaagggggtgcctttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggtaatacccatgtctttagtcatcaagagaccat |
471 |
Q |
| |
|
| ||||||| || ||||||| ||||||| ||| || | ||| ||| |||| ||||||| | || ||| |||||| ||||| || ||||||||| | |
|
|
| T |
31942754 |
tagttcaaggaggggcctttggtgatgttaatagcatgaagagaatcataatagcaaactagctcagtgatatccatgtatttagccaacaagagaccgt |
31942853 |
T |
|
| Q |
472 |
gatagatgacata |
484 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31942854 |
gatagatgacata |
31942866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 45468739 - 45468767
Alignment:
| Q |
19 |
tcctctgtaccgtggaagtgtatatgtat |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45468739 |
tcctctgtaccgtggaagtgtatatgtat |
45468767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 549
Target Start/End: Complemental strand, 24874146 - 24873987
Alignment:
| Q |
390 |
ttgatgatgttgatatagtgtaaagagtcagaataataaactaggttggtaatacccatgtctttagtcatcaagagaccatgatagatgacatataact |
489 |
Q |
| |
|
|||| |||||||||| | |||||||| |||||||| |||| | | ||||||||||| ||||||| || ||||||||| | |||||||||||| | | |
|
|
| T |
24874146 |
ttgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttctttagccaacaagagacccttatagatgacatagagtt |
24874047 |
T |
|
| Q |
490 |
cagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctgacaagaagaaac |
549 |
Q |
| |
|
| |||||||| |||||||| |||||| ||||||| ||| |||| ||||||||||| |||| |
|
|
| T |
24874046 |
cggcatacaagatatcagatgaattttgaatgtatccataaaatcctgacaagaaaaaac |
24873987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 438 - 544
Target Start/End: Original strand, 11052150 - 11052256
Alignment:
| Q |
438 |
gtaatacccatgtctttagtcatcaagagaccatgatagatgacatataactcagcatacaaaatatcagaagaatttggaatgtagccagaaaagcctg |
537 |
Q |
| |
|
|||||||| || ||||| | || ||||||||| | ||||||| |||| | |||| ||||||| |||||||| | |||| ||||||| | ||||||||||| |
|
|
| T |
11052150 |
gtaatacctatttctttggccaacaagagacccttatagatggcatagagctcaacatacaagatatcagatggattttgaatgtacctagaaaagcctg |
11052249 |
T |
|
| Q |
538 |
acaagaa |
544 |
Q |
| |
|
||||||| |
|
|
| T |
11052250 |
acaagaa |
11052256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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