View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_high_9 (Length: 383)
Name: NF18927_high_9
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 5330782 - 5330427
Alignment:
| Q |
16 |
atccaggacgccaatgcagtagcattagaactgactcaacaacaaagaaaccaaaccattagttaaatcaaatcaaaggttttaatttcactaattgtgt |
115 |
Q |
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| T |
5330782 |
atccaggacgccaatgcagtagcattagaactgactcaacaacaaagaaaccaaaccattagttaaatcaaatcaaaggttttaatttcactaattgtgt |
5330683 |
T |
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| Q |
116 |
taggaaattaatcaaatactaaaaatggtaaagtttttatgggtctattggattaatatgcttacctagtgctgcaactagtgttactaagttgaccgtt |
215 |
Q |
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| T |
5330682 |
taggaaattaatcaaatactaataatggtaaagtttttatgggtctattggattaatatgcttacctagtgctgcaactagtgttactaagttgaccgtt |
5330583 |
T |
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| Q |
216 |
agaacaactatatgtgctgtatgcctatgacacattaagagcatcaaatcaataaattaaactaaattaaaaagcaagaaacaggattagtttatttaaa |
315 |
Q |
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| T |
5330582 |
agaacaactatatgtgctgtatgcctatgacacattaagagcatcaaatcaataaattaaactaaattaaaaagcaagaaacaggattagtttatttaaa |
5330483 |
T |
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| Q |
316 |
gagaaatcaagtttaatgcatacaaagtatcaatggctttgttgaatgattgttca |
371 |
Q |
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| T |
5330482 |
gagaaatcaagtttaatgcatacaaagtatcaatggctttgttgaatgattgttca |
5330427 |
T |
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