View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18927_low_12 (Length: 359)

Name: NF18927_low_12
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18927_low_12
NF18927_low_12
[»] chr6 (1 HSPs)
chr6 (14-359)||(27159354-27159698)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 27159354 - 27159698
Alignment:
Q  14 aagaatatctgagaaatttctgcaaagagaaagggattcatgtgagtgcatggtcccctttgggtgctaatggagcaccgtggggttcacttgctgttat 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159354 aagaatatctgagaaagttctgcaaagagaaagggattcatgtgagtgcatggtcccctttgggtgctaatggagcaccgtggggttcacttgctgttat 27159453  T
Q  114 ggacaatccaataataaaagacattgcaatctcatcaggaaaagctatagcacaggtgaattttcatgctaatgaaatttcttctgcattattaggaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||| |||||||||    
T  27159454 ggacaatccaataataaaagacattgcaatctcatcaggaaaagctatagctcaggtgaattttcatactaatcaaatttctt-tgcattgttaggaatt 27159552  T
Q  214 tataggttgttatgataaatcatggccctaaaatttattttttgcattatacaagttttcagttataggtgtgattgcttttatatagttatgttacaac 313  Q
    || ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27159553 tagaggttcttataataaatcatggcactaaaatttattttttgcattatacaagttttcagttataggtgtgattgcttttacatagttatgttacaac 27159652  T
Q  314 ttgtgatattgtagaaaatggtgaataaatgtgactaaaatcaaat 359  Q
    || |||||| ||||||||| |||||||||||| |||||||||||||    
T  27159653 ttatgatatagtagaaaatagtgaataaatgtaactaaaatcaaat 27159698  T

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