View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_low_13 (Length: 353)
Name: NF18927_low_13
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 3084112 - 3083961
Alignment:
| Q |
184 |
ataacataacatagcatgcatgtattattagtattaattatatcattcttctagaagctcagcaatttgtaatcttnnnnnnnnnnnnnnnnggaccaca |
283 |
Q |
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| T |
3084112 |
ataacataacatagcatgcatgtattattagtattaattatatcattattctagaagctcagcaatttgtaatcttaaaaaaatataaaaaaggaccaca |
3084013 |
T |
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| Q |
284 |
atgttcttccatagggtgacaacaacaagtgctatgtaacatatgtttgcac |
335 |
Q |
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| T |
3084012 |
atgttcttccatagggtgacaacagcaagtgctatgtaacatatgtttgcac |
3083961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 3084238 - 3084157
Alignment:
| Q |
95 |
aacatggtgcaaaaagctggggtgagtggttaattgtaggcatgctaatactcgtgcaagcacatgctcatttcaactagtg |
176 |
Q |
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| T |
3084238 |
aacatggtgcaagaagctggggtgagtggttaattgtaggcatgctaatactcgtgcaagcacatgctcatttcaactagtg |
3084157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 3084466 - 3084376
Alignment:
| Q |
12 |
agagaggcacaatgaaaatatatgaaagtgttgtcttaaaattgttatataaatatcatttccctattaagtaagtaagtattaacatggtgcaa |
106 |
Q |
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| T |
3084466 |
agagaggcacaatgaaaatatatgaaagtgttgtcttaaaattgttatataaatatcattttcctattaagta----agtattaacatggtgcaa |
3084376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 3076448 - 3076397
Alignment:
| Q |
276 |
ggaccacaatgttcttccatagggtgacaacaacaagtgctatgtaacatat |
327 |
Q |
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| T |
3076448 |
ggaccaccatgttcttccatggggtgacaataacaagtgctatgtaagatat |
3076397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 3319398 - 3319441
Alignment:
| Q |
284 |
atgttcttccatagggtgacaacaacaagtgctatgtaacatat |
327 |
Q |
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| T |
3319398 |
atgttcttccatggggtgacaacaacaagtgctatgtaagatat |
3319441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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