View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_low_14 (Length: 352)
Name: NF18927_low_14
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 41859933 - 41859615
Alignment:
| Q |
16 |
atgaaagttaaacaaagctcctcatatgtaagttcacatgatgatgaataattgaagggtttctactaataaaatggagaactaattgcacatacctgga |
115 |
Q |
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| T |
41859933 |
atgaaagttaaacaaagctcctcatatgtaagttcacatgatgatgaataattgaagggtttctactaataaaatggagaactaattgcacatacctgga |
41859834 |
T |
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| Q |
116 |
atcaacttaagtacataatcatttatttgatcaactacctcatttgtgtaggtcaaaaatagctcttgattgcaaatattgttcattgttgtattgtgaa |
215 |
Q |
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| T |
41859833 |
atcaacttaagtacataatcatttatttgatcaactacctcatttgtgtaggtcaaaa-tagctcttgattgcaaatattgttcattgttgtattgtgaa |
41859735 |
T |
|
| Q |
216 |
agaagatctggatatgtactttgaacaatagcatcaataggatcaccaggtgaagtatctacttcagcataaccatcattaggctctgacatctttctag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41859734 |
agaagatctggatatgtactttgaacaatagcatcaataggatcaccaggtgaagtatctacttcagcataaccatcattaggctctgacatctttctag |
41859635 |
T |
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| Q |
316 |
tcagtacttgagcaaaagtt |
335 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
41859634 |
tcagtacttgagaaaaagtt |
41859615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 41887831 - 41887516
Alignment:
| Q |
19 |
aaagttaaacaaagctcctcatatgtaagttcacatgatgatgaataattgaagggtttctactaataaaatggagaactaattgcacatacctggaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41887831 |
aaagttaaacaaagctcctcatatgtaagttcacatgatgatgaataattgaagggtttctactaataaaatggagaactaattgcacatacctggaatc |
41887732 |
T |
|
| Q |
119 |
aacttaagtacataatcatttatttgatcaactacctcatttgtgtaggtcaaaaatagctcttgattgcaaatattgttcattgttgtattgtgaaaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41887731 |
aacttaagtacataatcatttatttgatcaactacctcatttgtgtaggtc-aaaatagctcttgattgcaaatattgttcattgttgtattgtgaaaga |
41887633 |
T |
|
| Q |
219 |
agatctggatatgtactttgaacaatagcatcaataggatcaccaggtgaagtatctacttcagcataaccatcattaggctctgacatctttctagtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
41887632 |
agatctggatatgtactttgaacaatagcatcaataggatcaccaggtgaagtatcaacttcagcataactatcattgggctctgacatttttctagtca |
41887533 |
T |
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| Q |
319 |
gtacttgagcaaaagtt |
335 |
Q |
| |
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|||||| |||||||||| |
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| T |
41887532 |
gtacttcagcaaaagtt |
41887516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 41878800 - 41878486
Alignment:
| Q |
19 |
aaagttaaacaaagctcctcatatgtaagttcacatgatgatgaataattgaagggtttcta-ctaataaaatggagaactaattgcacatacctggaat |
117 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||| | | ||| |||||||| ||| |||| ||||| |
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| T |
41878800 |
aaagttaaacaaagctcctcaaatttaagttcacatgataatgaataattgaagggtttctttctactga--tggttaactaattacacgtaccaggaat |
41878703 |
T |
|
| Q |
118 |
caacttaagtacataatcatttatttgatcaactacctcatttgtgtaggtcaaaaatagctcttgattgcaaatattgttcattgttgtattgtgaaag |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| | |||||||| ||||||||||||| |
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| T |
41878702 |
caacttaagtacataatcatttatttgatcaactacctcatctgttgaggtcaaaa-tagctcttgattgcaaaaactgttcattattgtattgtgaaac |
41878604 |
T |
|
| Q |
218 |
aagatctggatatgtactttgaacaatagcatcaataggatcaccaggtgaagtatctacttcagcataaccatcattaggctctgacatctttctagtc |
317 |
Q |
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||||| |||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
41878603 |
aagatttggatacgtgctttgcacaatagcatcaataggatcaccaggtggagtatctacttcagcataactatcattgggctctgacatctttccagtc |
41878504 |
T |
|
| Q |
318 |
agtacttgagcaaaagtt |
335 |
Q |
| |
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|||| || |||||||||| |
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| T |
41878503 |
agtatttcagcaaaagtt |
41878486 |
T |
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