View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_low_15 (Length: 347)
Name: NF18927_low_15
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_low_15 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 49098501 - 49098298
Alignment:
| Q |
18 |
actacaacatgcccctgtctacccaggtatctagctagtagaagtgaagtgctact-atgttatgaattaaattagtaatttatattcattcatgca--- |
113 |
Q |
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| T |
49098501 |
actacaacatgcccctgtctacccaggtatctagctagtagaagtgaagtgctacgcatgttatgcattaaattagtaatttatattcattcattcattc |
49098402 |
T |
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| Q |
114 |
---------ggtgtggaacatgtggggggagatatgtttgagagcgttcctgctggggatgccatttttatgaaggtaagcttttacaatctgcagttgc |
204 |
Q |
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| T |
49098401 |
attcatgaaggtgtggaacatgtggggggagatatgtttgagagcgttcctgctggggatgccatttttatgaaggtaagcttttacaatctgcagttgc |
49098302 |
T |
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| Q |
205 |
tata |
208 |
Q |
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|||| |
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| T |
49098301 |
tata |
49098298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 206 - 339
Target Start/End: Complemental strand, 49098182 - 49098049
Alignment:
| Q |
206 |
atattaaaattgattgagatgagagttttgtctttaatttgaataaatattttttcagtggatacttcacgattggagtgatgaacattgcttgaagctg |
305 |
Q |
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| T |
49098182 |
atattaaaattgattgagatgagagttttgtctttaatttgaataaatattttttcagtggatacttcacgattggagtgatgaacattgcttgaagctg |
49098083 |
T |
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| Q |
306 |
ttgaaaaattgttacaaagctattcctgatgatg |
339 |
Q |
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| T |
49098082 |
ttgaaaaattgttacaaagctattcctgaggatg |
49098049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 49106595 - 49106517
Alignment:
| Q |
261 |
cagtggatacttcacgattggagtgatgaacattgcttgaagctgttgaaaaattgttacaaagctattcctgatgatg |
339 |
Q |
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| T |
49106595 |
cagtggatacttcatgattggagtgatgaacaatgcttgaagcttttgaagaactgctatgatgctattcccgatgatg |
49106517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 8846838 - 8846915
Alignment:
| Q |
262 |
agtggatacttcacgattggagtgatgaacattgcttgaagctgttgaaaaattgttacaaagctattcctgatgatg |
339 |
Q |
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| T |
8846838 |
agtggatacttcatgactggagtgatgaacaatgtttgaagttattgaagaattgtcataaagctattcctaatgatg |
8846915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 8846438 - 8846509
Alignment:
| Q |
110 |
tgcaggtgtggaacatgtggggggagatatgtttgagagcgttcctgctggggatgccatttttatgaaggt |
181 |
Q |
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| T |
8846438 |
tgcaggtgtgacacatgtgggaggagatatgtttgagagtgttcctgatggagatgtcatatttttgaaggt |
8846509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 28624026 - 28623969
Alignment:
| Q |
262 |
agtggatacttcacgattggagtgatgaacattgcttgaagctgttgaaaaattgtta |
319 |
Q |
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| T |
28624026 |
agtggatactccatgattggagtgatgagcattgcttaaagcttttgaagaattgtta |
28623969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 28628363 - 28628306
Alignment:
| Q |
262 |
agtggatacttcacgattggagtgatgaacattgcttgaagctgttgaaaaattgtta |
319 |
Q |
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| T |
28628363 |
agtggatactccatgattggagtgatgagcattgcttaaagattttgaagaattgtta |
28628306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 28736882 - 28736825
Alignment:
| Q |
262 |
agtggatacttcacgattggagtgatgaacattgcttgaagctgttgaaaaattgtta |
319 |
Q |
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| T |
28736882 |
agtggatactccatgattggagtgacgagcattgcttaaagctgttgaagaactgtta |
28736825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 8264 - 8321
Alignment:
| Q |
262 |
agtggatacttcacgattggagtgatgaacattgcttgaagctgttgaaaaattgtta |
319 |
Q |
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| T |
8264 |
agtggatactccatgattggagtgatgagcattgcttaaagattttgaagaattgtta |
8321 |
T |
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