View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18927_low_23 (Length: 227)

Name: NF18927_low_23
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18927_low_23
NF18927_low_23
[»] chr4 (2 HSPs)
chr4 (146-214)||(11142514-11142582)
chr4 (18-85)||(11142386-11142453)
[»] chr1 (1 HSPs)
chr1 (159-214)||(46710017-46710072)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 11142514 - 11142582
Alignment:
Q  146 actgtattgtcttatctcttgaaaaaatgcatcgtgatggtagacaactagttaaaggcagttcttctc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11142514 actgtattgtcttatctcttgaaaaaatgcatcgtgatggtagacaactagttaaaggcagttcttctc 11142582  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 11142386 - 11142453
Alignment:
Q  18 aaaacatatcatttcattccttttttagttccttaacttgtaccctaacaagttagcatgacccttgt 85  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11142386 aaaacgtatcatttcactccttttttagttccttaacttgtaccctaacaagttagcatgacccttgt 11142453  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 46710072 - 46710017
Alignment:
Q  159 atctcttgaaaaaatgcatcgtgatggtagacaactagttaaaggcagttcttctc 214  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||    
T  46710072 atctcttgaaaaacttcattgtgatggtaggcaactagttaaaggcagttcttctc 46710017  T

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