View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_low_3 (Length: 646)
Name: NF18927_low_3
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 43380254 - 43380718
Alignment:
| Q |
1 |
tgctaatgttcgcatttgctactcccccttttcaagaacagcccacactgctaatgttgttgcaacagcattgaatattccttttcatgcctctcagtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43380254 |
tgctaatgttcgcatttgctactcccccttttcaagaacaacccacactgctaatgttgttgcaacagcattgaatattccttttcatgcctctcattgt |
43380353 |
T |
|
| Q |
101 |
aaggtcatccaagatcttcgagagcgctactttggtccttcctttgagcttttatctcatgataaggtaactcattcataaatggctcaatttgtgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43380354 |
aaggtcatccaagatcttcgagagcgctactttggtccttcctttgagcttttatctcatgataaggtaactcattcataaatggctcaatttgtgtcat |
43380453 |
T |
|
| Q |
201 |
gacttttaagacagagaatcagtttccaacaaatgaaaagtagtttgttaaactcattttctcttttcannnnnnnatcaacaaacagtatgatcatatt |
300 |
Q |
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|| |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
43380454 |
gagttttaagacagagaatcagttt-taagtcatg------agtttgttaaactcattttctcttttcatttttttatc----aatagtatgatcatatt |
43380542 |
T |
|
| Q |
301 |
tgggaaatagatgagaaagatcctctttttgggccagaaggaggggaaagtgttaaggatgttgccagtagacttgcaaaaacaatggccattttcgaac |
400 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43380543 |
tgggaaatagatgagaaagatcctcttgttgggccagaaggaggggaaagtgttaaggatgttgccagtagacttgcaaaaacaatggccattatcgaac |
43380642 |
T |
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| Q |
401 |
aagaatttgaagggtacccatttctgcctttaaatatcatttgaaattcttctagtatgtgtcttttttatcacaa |
476 |
Q |
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| T |
43380643 |
aagaatttgaagggtacccatttctgcctttaaatatcatttgaaattcttctagtatgtgtcttttttatcacaa |
43380718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 473 - 630
Target Start/End: Original strand, 43380764 - 43380921
Alignment:
| Q |
473 |
acaaaagattcaccgtaacatgcaaatacttttcaaaatttcagttggtgaatattttattttggcttgtgatctagtatcaatcaatctcattccattc |
572 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43380764 |
acaaaagattcactgtaacatgcaaatacttttcaaaatttcagttagtcaatattttattttgtcttgtgatctagtatcaatcaatctcattccattc |
43380863 |
T |
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| Q |
573 |
cacatcatgcagatgtgcgattttggttgtcagccatggggatcccctgcagatcttg |
630 |
Q |
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| T |
43380864 |
cacatcattcagatgtgcgattttggttgtcagccatggggatcccctgcagatcttg |
43380921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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