View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18927_low_4 (Length: 568)

Name: NF18927_low_4
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18927_low_4
NF18927_low_4
[»] chr7 (15 HSPs)
chr7 (98-548)||(24863522-24863972)
chr7 (287-548)||(24834685-24834946)
chr7 (104-204)||(24835050-24835150)
chr7 (453-547)||(24697227-24697321)
chr7 (100-204)||(24827350-24827457)
chr7 (456-547)||(24537368-24537459)
chr7 (450-547)||(24896170-24896267)
chr7 (451-547)||(24807220-24807316)
chr7 (450-547)||(24842954-24843051)
chr7 (450-547)||(24854930-24855027)
chr7 (453-541)||(24727131-24727219)
chr7 (450-548)||(24754937-24755035)
chr7 (450-548)||(24899820-24899918)
chr7 (453-541)||(24826962-24827050)
chr7 (164-204)||(24855793-24855833)
[»] chr8 (1 HSPs)
chr8 (314-548)||(38612700-38612934)


Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 98 - 548
Target Start/End: Complemental strand, 24863972 - 24863522
Alignment:
Q  98 gcgaagaaaatcaacaatcttgctctctctgtgttaggatactatcctcttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttct 197  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863972 gcgaagaaaatcaacaatcttgctctctctgtcttaggatactatcctcttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttct 24863873  T
Q  198 ttgttaatggtacaggtgagagaagaacggacaatcttgtacttggcattacggatactactgccattgagaagctaaagctgaatagctgtgctttaag 297  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24863872 ttgttaatggtacaggtgagagaagaatggacaatcttgtacttggcattacggatactactgccattgagaagctaaagctgaatcgatgtgctttaag 24863773  T
Q  298 tctccaagctgcaggtgtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtggtgtaatagta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863772 tctccaagctgcaggtgtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtggtgtaatagta 24863673  T
Q  398 aggattgggaatttcatnnnnnnnncaaagcataggaatgtgacagtaagccaagtgaaaggtttggactttcattttaagtttgaaaatgggaaactga 497  Q
    |||||||||||||||||        | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24863672 aggattgggaatttcataaaaaaaactaagcataggaatgcgacagtaagccaagtgaaaggtttggactttcattttaagtttgacaatgggaaactga 24863573  T
Q  498 aaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaatg 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24863572 aaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaatg 24863522  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 287 - 548
Target Start/End: Complemental strand, 24834946 - 24834685
Alignment:
Q  287 tgtgctttaagtctccaagctgcaggtgtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtg 386  Q
    |||||||| |||||||| |||||||| |||||| ||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||| |||| |||    
T  24834946 tgtgctttgagtctccaggctgcaggggtaagtttcaaagttcttgaagatagagatgaagcgatttcttgcttcgatttgatgaggaattattttcgtg 24834847  T
Q  387 gtgtaatagtaaggattgggaatttcatnnnnnnnncaaagcataggaatgtgacagtaagccaagtgaaaggtttggactttcattttaagtttgaaaa 486  Q
    ||||| | |||||| || | ||  ||||        |  ||||   | ||||| | |||||  |||||||||||||||||||  ||||||||||   ||     
T  24834846 gtgtactcgtaaggcttcgtaacatcatattcaatactgagcaagtggatgtggcggtaagggaagtgaaaggtttggacttcaattttaagttcagaat 24834747  T
Q  487 tgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaatg 548  Q
     ||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24834746 ggggaaactcgaaattgcacagttgcatatcacagaaacaacgaaagcaaagtggcgcaatg 24834685  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 24835150 - 24835050
Alignment:
Q  104 aaaatcaacaatcttgctctctctgtgttaggatactatcctcttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttctttgtta 203  Q
    ||||| ||| ||||||| ||| |||| |||||||| | | || |||||| |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24835150 aaaattaacgatcttgccctcactgtcttaggatattcttctattcagttaccgtgtctccatgcccctcacattcttgatcttgtccacttctttgtta 24835051  T
Q  204 a 204  Q
    |    
T  24835050 a 24835050  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 453 - 547
Target Start/End: Complemental strand, 24697321 - 24697227
Alignment:
Q  453 tgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 547  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||  |||||||||| |||||||||||  ||||||||||||| |||||| |||||    
T  24697321 tgaaatgtttgaactttcactttaagtttgaaaaggggaaacttgaaattgaacaattgcatatcactaaaacaacaaaagccaagtggtgcaat 24697227  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 24827457 - 24827350
Alignment:
Q  100 gaagaaaatcaacaatcttgctctctctgtgttaggatactatcct---cttcagtcaccgtgtctcgaagcccctcacattcttgatcttgtccacttc 196  Q
    ||||||||| ||||||||||| ||  |||| |||||||||| ||||   ||||||  ||||||| |||| ||||||||||||||||||||||||||||||    
T  24827457 gaagaaaatgaacaatcttgcccttgctgtcttaggatactctcctgatcttcagataccgtgtgtcgatgcccctcacattcttgatcttgtccacttc 24827358  T
Q  197 tttgttaa 204  Q
    || |||||    
T  24827357 ttcgttaa 24827350  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 456 - 547
Target Start/End: Original strand, 24537368 - 24537459
Alignment:
Q  456 aaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 547  Q
    ||||| |||||||| | || ||||||||||| ||| ||||  ||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  24537368 aaggtatggactttaaattcaagtttgaaaagggggaacttgaaattgaacagttgcatatcacaaaaacaacaaaagctaagtggtgcaat 24537459  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 24896267 - 24896170
Alignment:
Q  450 aagtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 547  Q
    |||||||||| ||||| ||| | ||||||||| |||||||| ||||  ||||||||||  ||||||||| | ||||||||||||| |||||| |||||    
T  24896267 aagtgaaaggattggatttttactttaagtttcaaaatggggaacttgaaattgaacaactgcatatcataaaaacaacaaaagctaagtggtgcaat 24896170  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 547
Target Start/End: Complemental strand, 24807316 - 24807220
Alignment:
Q  451 agtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 547  Q
    ||||| ||||||| ||||| | |||||||||||||| ||||||||  |||||| ||   ||||||||||| ||||||| || |||||||||||||||    
T  24807316 agtgagaggtttgaactttgagtttaagtttgaaaacgggaaacttcaaattgcaccactgcatatcacaaaaacaacgaaggcaaagtggcgcaat 24807220  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 24842954 - 24843051
Alignment:
Q  450 aagtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 547  Q
    |||| ||||||||||| ||| | ||| ||||  |||| ||||||||| |||||| |||||| ||||||||  ||||||| ||||||||||||| ||||    
T  24842954 aagttaaaggtttggaattttactttgagttcaaaaaggggaaactggaaattgcacagttacatatcactaaaacaacgaaagcaaagtggctcaat 24843051  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 24855027 - 24854930
Alignment:
Q  450 aagtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaat 547  Q
    |||||||||| ||||| ||| | ||||||||| |||||||| ||||  ||||||||||  ||||||||||| |||||| |||||  |||||| |||||    
T  24855027 aagtgaaaggattggatttttactttaagtttcaaaatggggaacttgaaattgaacaactgcatatcacaaaaacaaaaaaagataagtggtgcaat 24854930  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 541
Target Start/End: Complemental strand, 24727219 - 24727131
Alignment:
Q  453 tgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtgg 541  Q
    ||||||||||||||||| | ||||||||| |||| || |||||  ||||||||||| | ||||||||| | ||||||||| | ||||||    
T  24727219 tgaaaggtttggacttttactttaagtttaaaaagggcaaacttgaaattgaacagctacatatcacaaacacaacaaaatccaagtgg 24727131  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 548
Target Start/End: Complemental strand, 24755035 - 24754937
Alignment:
Q  450 aagtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaatg 548  Q
    |||| |||||| |||||||| | ||||| |||||||| |||| |||| |||||| ||||||  | || ||| ||||||||||||| |||||| ||||||    
T  24755035 aagttaaaggtatggacttttactttaactttgaaaaggggacactggaaattgcacagttagagataacaaaaacaacaaaagctaagtggtgcaatg 24754937  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 548
Target Start/End: Original strand, 24899820 - 24899918
Alignment:
Q  450 aagtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtggcgcaatg 548  Q
    |||||| ||||||||| ||  | ||||||||||| ||||||||| |  |||||| ||| |||||||| ||| |||| || |||||||||||| ||||||    
T  24899820 aagtgagaggtttggatttcgagtttaagtttgagaatgggaaatttgaaattgcacaattgcatattacaaaaactacgaaagcaaagtggtgcaatg 24899918  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 541
Target Start/End: Complemental strand, 24827050 - 24826962
Alignment:
Q  453 tgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgcatatcacagaaacaacaaaagcaaagtgg 541  Q
    ||||||||||||||||| | |||||||||||||| | ||  ||  ||||| ||||  ||||||||||| |||| |||||||| ||||||    
T  24827050 tgaaaggtttggacttttactttaagtttgaaaaggagactcttgaaattaaacaactgcatatcacaaaaacgacaaaagccaagtgg 24826962  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 24855833 - 24855793
Alignment:
Q  164 gaagcccctcacattcttgatcttgtccacttctttgttaa 204  Q
    ||||||||||||||||||||| |||||||||| || |||||    
T  24855833 gaagcccctcacattcttgatattgtccactttttcgttaa 24855793  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 548
Target Start/End: Complemental strand, 38612934 - 38612700
Alignment:
Q  314 gtaagtatcaaagttcttgaagatagggataaagggatttcttgcttcggtttgatgaggaattgttttggtggtgtaatagtaaggattgggaatttca 413  Q
    |||||| ||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||| |||| |||||||| | |||||| ||   ||| |||    
T  38612934 gtaagtttcaaagttcttgaagatagagatgaagcgatttcttgcttcgatttgatgaggaattattttcgtggtgtactcgtaaggcttcctaatatca 38612835  T
Q  414 tnnnnnnnncaaagcataggaatgtgacagtaagccaagtgaaaggtttggactttcattttaagtttgaaaatgggaaactgaaaattgaacagttgca 513  Q
    |           ||||   | |||||   |||||  |||||||||||||||| ||  ||||||||||   ||  ||||||||  |||||| |||||||||    
T  38612834 tattcaatattgagcaattggatgtggtggtaagggaagtgaaaggtttggaattcaattttaagttcagaatggggaaactcgaaattgcacagttgca 38612735  T
Q  514 tatcacagaaacaacaaaagcaaagtggcgcaatg 548  Q
    ||||||||||||||| |||||||| ||||||||||    
T  38612734 tatcacagaaacaacgaaagcaaattggcgcaatg 38612700  T

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